Parental gene:

DHFR, ENSG00000228716

Aliases:DHFR, DHFRP1, DYR
Description:dihydrofolate reductase [Source:HGNC Symbol;Acc:2861]
Organism:Human (Homo sapiens)
Coordinates:5:79922046..79950802(-)


>ENSG00000228716
ATGGTTGGTTCGCTAAACTGCATCGTCGCTGTGTCCCAGAACATGGGCATCGGCAAGAACGGGGACCTGCCCTGGCCACC
GCTCAGGAATGAATTCAGATATTTCCAGAGAATGACCACAACCTCTTCAGTAGAAGGTAAACAGAATCTGGTGATTATGG
GTAAGAAGACCTGGTTCTCCATTCCTGAGAAGAATCGACCTTTAAAGGGTAGAATTAATTTAGTTCTCAGCAGAGAACTC
AAGGAACCTCCACAAGGAGCTCATTTTCTTTCCAGAAGTCTAGATGATGCCTTAAAACTTACTGAACAACCAGAATTAGC
AAATAAAGTAGACATGGTCTGGATAGTTGGTGGCAGTTCTGTTTATAAGGAAGCCATGAATCACCCAGGCCATCTTAAAC
TATTTGTGACAAGGATCATGCAAGACTTTGAAAGTGACACGTTTTTTCCAGAAATTGATTTGGAGAAATATAAACTTCTG
CCAGAATACCCAGGTGTTCTCTCTGATGTCCAGGAGGAGAAAGGCATTAAGTACAAATTTGAAGTATATGAGAAGAATGA
TTAA

Library Parental gene expression (RPM)
bodymap2_adipose 5 .11 RPM
bodymap2_adrenal 11 .85 RPM
bodymap2_brain 6 .75 RPM
bodymap2_breast 25 .29 RPM
bodymap2_colon 6 .90 RPM
bodymap2_heart 1 .51 RPM
bodymap2_kidney 4 .55 RPM
bodymap2_liver 6 .25 RPM
bodymap2_lung 1 .99 RPM
bodymap2_lymph_node 7 .80 RPM
bodymap2_ovary 7 .96 RPM
bodymap2_prostate 4 .57 RPM
bodymap2_skeletal_muscle 3 .07 RPM
bodymap2_testis 12 .14 RPM
bodymap2_thyroid 13 .69 RPM
bodymap2_white_blood_cells 7 .58 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000015750 ortholog_one2many 2 retrogenes
retro_amel_218, retro_amel_842,
Bos taurus ENSBTAG00000007681 ortholog_one2many 1 retrogene
retro_btau_351,
Callithrix jacchus ENSCJAG00000019556 ortholog_many2many 4 retrogenes
retro_cjac_2017, retro_cjac_2298, retro_cjac_2446, retro_cjac_531,
Equus caballus ENSECAG00000026827 ortholog_one2many 1 retrogene
retro_ecab_513,
Felis catus ENSFCAG00000026745 ortholog_one2many 3 retrogenes
retro_fcat_579, retro_fcat_705, retro_fcat_841,
Gorilla gorilla ENSGGOG00000022366 ortholog_one2one 2 retrogenes
retro_ggor_1959, retro_ggor_2429,
Myotis lucifugus ENSMLUG00000012200 ortholog_one2many 2 retrogenes
retro_mluc_1109, retro_mluc_2577,
Macaca mulatta ENSMMUG00000018283 ortholog_many2many 13 retrogenes
retro_mmul_1496, retro_mmul_425, retro_mmul_692, retro_mmul_693, retro_mmul_695, retro_mmul_700, retro_mmul_701, retro_mmul_704, retro_mmul_738, retro_mmul_760, retro_mmul_768, retro_mmul_82, retro_mmul_994,
Monodelphis domestica ENSMODG00000024860 ortholog_one2many 3 retrogenes
retro_mdom_1685, retro_mdom_604, retro_mdom_703,
Mustela putorius furo ENSMPUG00000008704 ortholog_one2many 1 retrogene
retro_mputfur_1107,
Mus musculus ENSMUSG00000021707 ortholog_one2many 1 retrogene
retro_mmus_3326,
Nomascus leucogenys ENSNLEG00000012989 ortholog_one2one 3 retrogenes
retro_nleu_1193, retro_nleu_2314, retro_nleu_2631,
Oryctolagus cuniculus ENSOCUG00000005127 ortholog_one2many 3 retrogenes
retro_ocun_1351, retro_ocun_1640, retro_ocun_650,
Otolemur garnettii ENSOGAG00000025320 ortholog_many2many 1 retrogene
retro_ogar_222,
Pongo abelii ENSPPYG00000015600 ortholog_one2one 2 retrogenes
retro_pabe_2959, retro_pabe_41,
Pan troglodytes ENSPTRG00000017042 ortholog_one2one 3 retrogenes
retro_ptro_109, retro_ptro_1551, retro_ptro_2988,
Rattus norvegicus ENSRNOG00000013521 ortholog_one2many 1 retrogene
retro_rnor_2030,
Sus scrofa ENSSSCG00000014125 ortholog_one2many 2 retrogenes
retro_sscr_104, retro_sscr_1131,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_hsap_6 93.44 97.86
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2. retro_hsap_1927 100.00 100.00
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3. retro_hsap_2119 81.90 55.08
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4. retro_hsap_3602 73.08 81.82
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Download FASTA sequences of all ENSG00000228716 retrocopies