RetrogeneDB ID: | retro_mputfur_1107 | ||
Retrocopylocation | Organism: | Ferret (Mustela putorius furo) | |
Coordinates: | GL897018.1:5101572..5101930(+) | ||
Located in intron of: | ENSMPUG00000009370 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Dhfr | ||
Ensembl ID: | ENSMPUG00000008704 | ||
Aliases: | None | ||
Description: | dihydrofolate reductase [Source:MGI Symbol;Acc:MGI:94890] |
Percent Identity: | 74.17 % |
Parental protein coverage: | 72.84 % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 1 |
Parental | EGKQNLVIMGRKT-WFSIPEKNRPLKDRINLVLSRDLKEPPQGAHFLAKSLDDALKLIEQPELANKVDMV |
EGK.N.VIMGRKT...S.P.KN..LK.R..LVL.R.LKEP.QGAHFLAKSL.DALKLI.QPEL..KVDMV | |
Retrocopy | EGK*NFVIMGRKT>THSLP*KN*LLKNRVQLVLRRELKEPLQGAHFLAKSLGDALKLI*QPELTKKVDMV |
Parental | WIVGGSSVYKEAMNKPGHLRLFVTRIMQEFESDT-FFPEIDLEKYKLLPE |
WIVGGSS.YKE.MNK..HL.LFVTRIMQEFE..T...PE.DL.KYKLLPE | |
Retrocopy | WIVGGSSAYKEGMNKSDHLKLFVTRIMQEFENNTXXXPETDLGKYKLLPE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000015750 | 2 retrocopies | |
Bos taurus | ENSBTAG00000007681 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000019556 | 4 retrocopies | |
Equus caballus | ENSECAG00000026827 | 1 retrocopy | |
Felis catus | ENSFCAG00000026745 | 3 retrocopies | |
Homo sapiens | ENSG00000228716 | 4 retrocopies | |
Gorilla gorilla | ENSGGOG00000022366 | 2 retrocopies | |
Myotis lucifugus | ENSMLUG00000012200 | 2 retrocopies | |
Macaca mulatta | ENSMMUG00000018283 | 13 retrocopies | |
Monodelphis domestica | ENSMODG00000024860 | 3 retrocopies | |
Mustela putorius furo | ENSMPUG00000008704 | 1 retrocopy |
retro_mputfur_1107 ,
|
Mus musculus | ENSMUSG00000021707 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000012989 | 3 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000005127 | 3 retrocopies | |
Otolemur garnettii | ENSOGAG00000025320 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000015600 | 2 retrocopies | |
Pan troglodytes | ENSPTRG00000017042 | 3 retrocopies | |
Rattus norvegicus | ENSRNOG00000013521 | 1 retrocopy | |
Sus scrofa | ENSSSCG00000014125 | 2 retrocopies |