RetrogeneDB ID: | retro_ggor_1846 | ||
Retrocopylocation | Organism: | Gorilla (Gorilla gorilla) | |
Coordinates: | 3:47251596..47252455(+) | ||
Located in intron of: | ENSGGOG00000028177 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | NRBF2 | ||
Ensembl ID: | ENSGGOG00000013016 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 89.24 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 1 |
Parental | MEVMEGPLNLAHQQSRRADRLLAAGKYEEAISCHKKAAAYLSEAMKLTQSEQAHLSLELQRDSHMKQLLL |
M.VMEGPLNLAHQQSRRAD.LLAAGKYEEAISCHKKAAAYLSEAMKLTQSEQA.LSLELQRDSH.KQLLL | |
Retrocopy | MKVMEGPLNLAHQQSRRADHLLAAGKYEEAISCHKKAAAYLSEAMKLTQSEQARLSLELQRDSHTKQLLL |
Parental | IQERWKRAQREERLKAQQNTDKDVAAHLQTSHKPSAEDAEGQSPLSQKYSPSTEKCLPEIQGIFDRDPDT |
IQERWKRAQREERLKA.QNTDKDVAAHLQ.SHK.SAEDAEGQSPLSQKYSPS.EK.LPEIQGIFDRD.DT | |
Retrocopy | IQERWKRAQREERLKA*QNTDKDVAAHLQASHKLSAEDAEGQSPLSQKYSPSSEKRLPEIQGIFDRDADT |
Parental | LLYLLQQKSEPAE-PCIGSKAPKDDKTIIEEQATKIADLKRHVEFLVAENERLRKENKQLKAEKARLLKG |
LLYLLQQKSEPAE.PCIGSKAP.DDKTIIEEQATKIADLKRHVEFLVAENERLRKEN...........KG | |
Retrocopy | LLYLLQQKSEPAE>PCIGSKAPEDDKTIIEEQATKIADLKRHVEFLVAENERLRKEN-N*RLKRPDF*KG |
Parental | PIEKELDVDADFVETSELWSLPPHSETATASSTWQKFAANTGKAKDIPIPNLPPLDFPSPELPLMELSED |
P.EKELDVDADFVETSEL.SLPPHSETATASSTWQKFAAN.GKAKDIPIP.LPPLDF.SPELPLM.L.E. | |
Retrocopy | PVEKELDVDADFVETSELRSLPPHSETATASSTWQKFAANAGKAKDIPIPSLPPLDFTSPELPLMDLPEN |
Parental | ILKGFMNN |
ILKGFMNN | |
Retrocopy | ILKGFMNN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 14 .43 RPM |
SRP007412_cerebellum | 0 .00 RPM | 9 .06 RPM |
SRP007412_heart | 0 .00 RPM | 2 .03 RPM |
SRP007412_kidney | 0 .00 RPM | 8 .34 RPM |
SRP007412_liver | 0 .00 RPM | 15 .22 RPM |
SRP007412_testis | 0 .83 RPM | 13 .88 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000004648 | 3 retrocopies | |
Homo sapiens | ENSG00000148572 | 3 retrocopies | |
Gorilla gorilla | ENSGGOG00000013016 | 2 retrocopies |
retro_ggor_1846 , retro_ggor_2685,
|
Macropus eugenii | ENSMEUG00000010849 | 3 retrocopies | |
Macaca mulatta | ENSMMUG00000017726 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000017183 | 1 retrocopy | |
Mus musculus | ENSMUSG00000075000 | 2 retrocopies | |
Otolemur garnettii | ENSOGAG00000005856 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000002411 | 3 retrocopies | |
Pan troglodytes | ENSPTRG00000002539 | 3 retrocopies | |
Rattus norvegicus | ENSRNOG00000000641 | 2 retrocopies | |
Sarcophilus harrisii | ENSSHAG00000004744 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000011341 | 1 retrocopy |