RetrogeneDB ID: | retro_shar_427 | ||
Retrocopylocation | Organism: | Tasmanian devil (Sarcophilus harrisii) | |
Coordinates: | GL842236.1:97815..98633(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | NRBF2 | ||
Ensembl ID: | ENSSHAG00000004744 | ||
Aliases: | None | ||
Description: | nuclear receptor binding factor 2 [Source:HGNC Symbol;Acc:19692] |
Percent Identity: | 84.31 % |
Parental protein coverage: | 97.5 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | INRAHQQSRKADRSLAAGKYEEAILCHQKAAAYLTEAMKLTQSEQALLSLELQRDSHMKQLLLIQERWKR |
.N.AHQQSRKA.RSLAAGKY.E.ILCHQKAAA.LTE.MKLTQS.QA.LSLE.Q.DSH.K.LLLIQERWKR | |
Retrocopy | LNLAHQQSRKAGRSLAAGKYKEVILCHQKAAANLTEVMKLTQSGQAQLSLESQKDSHVKHLLLIQERWKR |
Parental | AKREERWRAQQTPDGTPQLLTSCKMAEDGSECHSVPRSQQFSPAVVPGVLDRDPDTLLFLLQ-KRKDPTE |
AKREERWRAQQTPDG...LLTSCKMAEDGSE.HS.PR.Q.FS...VPGVLDRDPDTLLFLLQ.KRKD.TE | |
Retrocopy | AKREERWRAQQTPDGAAWLLTSCKMAEDGSEGHSAPRPQKFSLTAVPGVLDRDPDTLLFLLQ<KRKDLTE |
Parental | PSPGSKVPKDDKTTIEEQATKIADLKRHVEFLVADNERLRRENKQLRAEKARLQKAPLEKELDVDADFVE |
P.PGSKVPK.DKTTIE..A.KI.DLK.HVEFL..D.ERL.RENKQLRAEKARLQKAPLEKELD.DADFVE | |
Retrocopy | PCPGSKVPKYDKTTIE*EASKISDLKGHVEFLINDKERLGRENKQLRAEKARLQKAPLEKELDIDADFVE |
Parental | KSELWSLPPPSETASASSTWQEFAANTGKAKDIPIPNLPPLDFPSPELPLLELPEDILKGLMNS |
KSEL.SLP.PSETA.ASSTWQEFAANTGKAKDIPIPNLP.LDFPSPELP.LELPEDILKG.MNS | |
Retrocopy | KSELGSLPSPSETALASSTWQEFAANTGKAKDIPIPNLPRLDFPSPELPFLELPEDILKGHMNS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000004648 | 3 retrocopies | |
Homo sapiens | ENSG00000148572 | 3 retrocopies | |
Gorilla gorilla | ENSGGOG00000013016 | 2 retrocopies | |
Macropus eugenii | ENSMEUG00000010849 | 3 retrocopies | |
Macaca mulatta | ENSMMUG00000017726 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000017183 | 1 retrocopy | |
Mus musculus | ENSMUSG00000075000 | 2 retrocopies | |
Otolemur garnettii | ENSOGAG00000005856 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000002411 | 3 retrocopies | |
Pan troglodytes | ENSPTRG00000002539 | 3 retrocopies | |
Rattus norvegicus | ENSRNOG00000000641 | 2 retrocopies | |
Sarcophilus harrisii | ENSSHAG00000004744 | 1 retrocopy |
retro_shar_427 ,
|
Ictidomys tridecemlineatus | ENSSTOG00000011341 | 1 retrocopy |