RetrogeneDB ID: | retro_itri_183 | ||
Retrocopylocation | Organism: | Squirrel (Ictidomys tridecemlineatus) | |
Coordinates: | AGTP01149321.1:703..1510(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSSTOG00000026572 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSSTOG00000011341 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 84.44 % |
Parental protein coverage: | 94.08 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | RADRLLAAGKYEEAISCHKKAAAYLSDAMKLTKSEQAHLSLELQRDSHMKQLLLIQERWKRAKREERSKA |
RADRL.A.GKY.EAISCHKKA.AYLSDA.KLTKSEQAHLSL.L..DSHM.QLLLIQERWKRAK.EE.SKA | |
Retrocopy | RADRL*ASGKYQEAISCHKKATAYLSDALKLTKSEQAHLSLQLKGDSHMEQLLLIQERWKRAKCEELSKA |
Parental | QNTDKDVATHLQASHKPSAEEAEGQSPLLSQKYSPSTEKHLPEIQGVFDRDPDTLLFLLQQKSEPTEPCI |
QNTDKDVATH.QASHKPS.E.AE.QSPLLSQ.YSP.TEKHL.EIQGVFDR...TLLFLLQQKSE.T.PCI | |
Retrocopy | QNTDKDVATHFQASHKPSTEVAEAQSPLLSQNYSPCTEKHLSEIQGVFDRNTETLLFLLQQKSETTQPCI |
Parental | GSKAPKDDKTIIEEQATKIADLKRHVEFLVAENERLRKENKQLKAEKARLLKGPVDKELDVDADFVEKSE |
GSKAPKDDK.IIE.QATKIA.LK...EFLVAENERLRKENK.LKAEKARL.K.PVDKELDVD.DF.EKS. | |
Retrocopy | GSKAPKDDKIIIEKQATKIANLKMYEEFLVAENERLRKENKALKAEKARLVKVPVDKELDVDTDFIEKSA |
Parental | LWSLPPHSDTATASSTWQKFAANTGKAKDIPIPNLPPLDFPSPELPLMELSEDFLKGLMN |
LW.LPPHSDTAT..STWQKFAANTGK.KDIPIPNLPPLDFPSP.LPLMELSEDFL.GL.N | |
Retrocopy | LWNLPPHSDTAT-PSTWQKFAANTGKDKDIPIPNLPPLDFPSPQLPLMELSEDFLEGLTN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000004648 | 3 retrocopies | |
Homo sapiens | ENSG00000148572 | 3 retrocopies | |
Gorilla gorilla | ENSGGOG00000013016 | 2 retrocopies | |
Macropus eugenii | ENSMEUG00000010849 | 3 retrocopies | |
Macaca mulatta | ENSMMUG00000017726 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000017183 | 1 retrocopy | |
Mus musculus | ENSMUSG00000075000 | 2 retrocopies | |
Otolemur garnettii | ENSOGAG00000005856 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000002411 | 3 retrocopies | |
Pan troglodytes | ENSPTRG00000002539 | 3 retrocopies | |
Rattus norvegicus | ENSRNOG00000000641 | 2 retrocopies | |
Sarcophilus harrisii | ENSSHAG00000004744 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000011341 | 1 retrocopy |
retro_itri_183 ,
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