RetrogeneDB ID: | retro_ogar_2110 | ||
Retrocopylocation | Organism: | Bushbaby (Otolemur garnettii) | |
Coordinates: | GL873591.1:2938907..2939770(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSOGAG00000027943 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | NRBF2 | ||
Ensembl ID: | ENSOGAG00000005856 | ||
Aliases: | None | ||
Description: | nuclear receptor binding factor 2 [Source:HGNC Symbol;Acc:19692] |
Percent Identity: | 89.27 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | LITGCLDLAHQQSRRADRLLATGKYEEAISCHKKAAAYLSEAMTLTQSEQAHLSLELQRESHMKQLLLIQ |
...G.L.LAHQQSRRAD.LLATGKYE.AISCHK.AAAYLSEAMTLTQSEQAHLSLELQR.SHMKQLLLIQ | |
Retrocopy | VMEGPLNLAHQQSRRADGLLATGKYEDAISCHKEAAAYLSEAMTLTQSEQAHLSLELQRDSHMKQLLLIQ |
Parental | ERWKRAKREERLKAQQNADKDVSPHLQTSHKPSAEDTEGQSPLLSQKYSPSTERHLPEIHGVFDRDPDTL |
E.WKRAKREERLKAQQNADKDVSPHLQTSHKPSAEDTEGQSPL..QKYSPSTERHLPEI.G.FDRDPD.L | |
Retrocopy | ELWKRAKREERLKAQQNADKDVSPHLQTSHKPSAEDTEGQSPLRFQKYSPSTERHLPEIDGIFDRDPDAL |
Parental | LFLLQQKSEPTEPCMGSKAPKDDKTII--EEQATKIADLKRHVEFLVAENERLRKENKQLKAEKARLLKG |
LFLLQQK.EPTEPCMGSKA..DD......EEQATKIADLKRHVEFLVAENERLRKENKQL.AEKARL.KG | |
Retrocopy | LFLLQQKNEPTEPCMGSKASEDDXXXXXREEQATKIADLKRHVEFLVAENERLRKENKQLRAEKARLVKG |
Parental | PIEKELEVDADFVEK-SELWSLPPPSETAAASSTWQKFAANTGKAKDIPIPNLPPLDFPSPELPLMDLSE |
PIEKELEVDADFV...SELWSLPPPSETAAASS.WQKFAANTGKAKDIPIPNLPPLDFPSPELPLMDLSE | |
Retrocopy | PIEKELEVDADFVDS<SELWSLPPPSETAAASSNWQKFAANTGKAKDIPIPNLPPLDFPSPELPLMDLSE |
Parental | DILKGLMNN |
D.LKGLMNN | |
Retrocopy | DVLKGLMNN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000004648 | 3 retrocopies | |
Homo sapiens | ENSG00000148572 | 3 retrocopies | |
Gorilla gorilla | ENSGGOG00000013016 | 2 retrocopies | |
Macropus eugenii | ENSMEUG00000010849 | 3 retrocopies | |
Macaca mulatta | ENSMMUG00000017726 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000017183 | 1 retrocopy | |
Mus musculus | ENSMUSG00000075000 | 2 retrocopies | |
Otolemur garnettii | ENSOGAG00000005856 | 1 retrocopy |
retro_ogar_2110 ,
|
Pongo abelii | ENSPPYG00000002411 | 3 retrocopies | |
Pan troglodytes | ENSPTRG00000002539 | 3 retrocopies | |
Rattus norvegicus | ENSRNOG00000000641 | 2 retrocopies | |
Sarcophilus harrisii | ENSSHAG00000004744 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000011341 | 1 retrocopy |