RetrogeneDB ID: | retro_hsap_3999 | ||
Retrocopylocation | Organism: | Human (Homo sapiens) | |
Coordinates: | 8:108995344..108996116(+) | ||
Located in intron of: | ENSG00000147655 | ||
Retrocopyinformation | Ensembl ID: | ENSG00000253228 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | NRBF2 | ||
Ensembl ID: | ENSG00000148572 | ||
Aliases: | NRBF2, COPR1, COPR2, NRBF-2 | ||
Description: | nuclear receptor binding factor 2 [Source:HGNC Symbol;Acc:19692] |
Percent Identity: | 94.62 % |
Parental protein coverage: | 89.9 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 2 |
Parental | MEVM-EGPLNLAHQQSRRADRLLAAGKYEEAISCHKKAAAYLSEAMKLTQSEQAHLSLELQRDSHMKQLL |
MEVM.EGPLNLAHQQSR.ADRLLA.GKYEEAISCHKKAAAYLSEAMKLTQSEQAHLSLELQRDSHMKQLL | |
Retrocopy | MEVM<EGPLNLAHQQSR*ADRLLAVGKYEEAISCHKKAAAYLSEAMKLTQSEQAHLSLELQRDSHMKQLL |
Parental | LIQERWKRAQREERLKAQQNTDKDAAAHLQTSHKPSAEDAEGQSPLSQKYSPSTEKCLPEIQGIFDRDPD |
LIQERWKRAQ.E.RLKAQQNTDKD.AAHLQ.SHKPS.EDAEGQSPLSQKYSPSTEKCLPEIQGIFDRDPD | |
Retrocopy | LIQERWKRAQGEARLKAQQNTDKDVAAHLQASHKPSVEDAEGQSPLSQKYSPSTEKCLPEIQGIFDRDPD |
Parental | TLLYLLQQKSEPAEPCIGSKAPKDDKTIIEEQATKIADLKRHVEFLVAENERLRKENK-QLKAEKARLLK |
TLLYLLQQKSEPAEPCIGSKAPKDDKTIIEEQATKIADLKRHVEFLVAEN.RLR.EN..QLKAEKARLLK | |
Retrocopy | TLLYLLQQKSEPAEPCIGSKAPKDDKTIIEEQATKIADLKRHVEFLVAEN*RLREENN<QLKAEKARLLK |
Parental | GPIEKELDVDADFVETSELWSLPPHAETATASSTWQKFAANTGKAKDIPI |
GPIEKELDVDADFVETSELWSLPPH.ETATASSTWQKFAANTGKAKDIP. | |
Retrocopy | GPIEKELDVDADFVETSELWSLPPHSETATASSTWQKFAANTGKAKDIPV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
bodymap2_adipose | 0 .00 RPM | 22 .12 RPM |
bodymap2_adrenal | 0 .00 RPM | 16 .76 RPM |
bodymap2_brain | 0 .00 RPM | 19 .41 RPM |
bodymap2_breast | 0 .00 RPM | 22 .22 RPM |
bodymap2_colon | 0 .00 RPM | 15 .00 RPM |
bodymap2_heart | 0 .00 RPM | 7 .40 RPM |
bodymap2_kidney | 0 .00 RPM | 13 .69 RPM |
bodymap2_liver | 0 .00 RPM | 29 .85 RPM |
bodymap2_lung | 0 .00 RPM | 19 .73 RPM |
bodymap2_lymph_node | 0 .00 RPM | 25 .67 RPM |
bodymap2_ovary | 0 .00 RPM | 17 .10 RPM |
bodymap2_prostate | 0 .00 RPM | 18 .22 RPM |
bodymap2_skeletal_muscle | 0 .00 RPM | 24 .03 RPM |
bodymap2_testis | 0 .00 RPM | 21 .79 RPM |
bodymap2_thyroid | 0 .00 RPM | 17 .04 RPM |
bodymap2_white_blood_cells | 0 .00 RPM | 83 .63 RPM |
Species | RetrogeneDB ID |
---|---|
Pan troglodytes | retro_ptro_2715 |
Gorilla gorilla | retro_ggor_2685 |
Pongo abelii | retro_pabe_3286 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000004648 | 3 retrocopies | |
Homo sapiens | ENSG00000148572 | 3 retrocopies |
retro_hsap_2643, retro_hsap_3999 , retro_hsap_433,
|
Gorilla gorilla | ENSGGOG00000013016 | 2 retrocopies | |
Macropus eugenii | ENSMEUG00000010849 | 3 retrocopies | |
Macaca mulatta | ENSMMUG00000017726 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000017183 | 1 retrocopy | |
Mus musculus | ENSMUSG00000075000 | 2 retrocopies | |
Otolemur garnettii | ENSOGAG00000005856 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000002411 | 3 retrocopies | |
Pan troglodytes | ENSPTRG00000002539 | 3 retrocopies | |
Rattus norvegicus | ENSRNOG00000000641 | 2 retrocopies | |
Sarcophilus harrisii | ENSSHAG00000004744 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000011341 | 1 retrocopy |
Library | Retrogene expression |
---|---|
CEU_NA11831 | 0 .00 RPM |
CEU_NA11843 | 0 .00 RPM |
CEU_NA11930 | 0 .00 RPM |
CEU_NA12004 | 0 .00 RPM |
CEU_NA12400 | 0 .35 RPM |
CEU_NA12751 | 0 .00 RPM |
CEU_NA12760 | 0 .00 RPM |
CEU_NA12827 | 0 .00 RPM |
CEU_NA12872 | 0 .00 RPM |
CEU_NA12873 | 0 .00 RPM |
FIN_HG00183 | 0 .00 RPM |
FIN_HG00277 | 0 .00 RPM |
FIN_HG00315 | 0 .00 RPM |
FIN_HG00321 | 0 .00 RPM |
FIN_HG00328 | 0 .02 RPM |
FIN_HG00338 | 0 .00 RPM |
FIN_HG00349 | 0 .00 RPM |
FIN_HG00375 | 0 .00 RPM |
FIN_HG00377 | 0 .00 RPM |
FIN_HG00378 | 0 .00 RPM |
GBR_HG00099 | 0 .00 RPM |
GBR_HG00111 | 0 .00 RPM |
GBR_HG00114 | 0 .00 RPM |
GBR_HG00119 | 0 .00 RPM |
GBR_HG00131 | 0 .03 RPM |
GBR_HG00133 | 0 .00 RPM |
GBR_HG00134 | 0 .00 RPM |
GBR_HG00137 | 0 .00 RPM |
GBR_HG00142 | 0 .03 RPM |
GBR_HG00143 | 0 .26 RPM |
TSI_NA20512 | 0 .00 RPM |
TSI_NA20513 | 0 .00 RPM |
TSI_NA20518 | 0 .00 RPM |
TSI_NA20532 | 0 .03 RPM |
TSI_NA20538 | 0 .00 RPM |
TSI_NA20756 | 0 .03 RPM |
TSI_NA20765 | 0 .00 RPM |
TSI_NA20771 | 0 .00 RPM |
TSI_NA20786 | 0 .00 RPM |
TSI_NA20798 | 0 .00 RPM |
YRI_NA18870 | 0 .00 RPM |
YRI_NA18907 | 0 .07 RPM |
YRI_NA18916 | 0 .19 RPM |
YRI_NA19093 | 0 .29 RPM |
YRI_NA19099 | 0 .11 RPM |
YRI_NA19114 | 0 .00 RPM |
YRI_NA19118 | 0 .00 RPM |
YRI_NA19213 | 0 .00 RPM |
YRI_NA19214 | 0 .00 RPM |
YRI_NA19223 | 0 .26 RPM |