RetrogeneDB ID: | retro_pabe_3286 | ||
Retrocopylocation | Organism: | Orangutan (Pongo abelii) | |
Coordinates: | 8:114804627..114805466(+) | ||
Located in intron of: | ENSPPYG00000018818 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | NRBF2 | ||
Ensembl ID: | ENSPPYG00000002411 | ||
Aliases: | None | ||
Description: | Nuclear receptor-binding factor 2 [Source:UniProtKB/Swiss-Prot;Acc:Q5R4C9] |
Percent Identity: | 93.31 % |
Parental protein coverage: | 98.61 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | EGPLNLAHQQSRRADRLLAAGKYEEAISCHKKAAAYLSEAMKLTQSEQAHLSLELQRDSHMKQLLLIQER |
EGPLNLAHQ.SR...RLLAAGKY.EAISCH.KAAAYLSEAMKLTQSEQAHLSLELQRDSHMKQLLLIQER | |
Retrocopy | EGPLNLAHQMSR---RLLAAGKYKEAISCHRKAAAYLSEAMKLTQSEQAHLSLELQRDSHMKQLLLIQER |
Parental | WKRAQREERLKAQQNTD-KDVAAHLQTSHKPSAEDAEGQSPLSQKYSPSTEKCLPEIQGIFDRDPDTLLY |
WKRAQREERLK.QQNT..KDVAAHLQ.SHKPSAEDAEGQSPLSQKYSPSTEKCLPEIQGIFDRDPDTLLY | |
Retrocopy | WKRAQREERLKGQQNTE<KDVAAHLQASHKPSAEDAEGQSPLSQKYSPSTEKCLPEIQGIFDRDPDTLLY |
Parental | LLQQKSEPAEPCIGSKAPKDDKTIIEEQATKIADLKRHVEFLVAENERLRKENKQLKAEKARLLKGPIEK |
LLQQKSEPAEPCIGSKAPKDDKTI.EEQATKIADLKRHVEFLVAENERLRKENKQLKAEKARLLKGPIE. | |
Retrocopy | LLQQKSEPAEPCIGSKAPKDDKTIREEQATKIADLKRHVEFLVAENERLRKENKQLKAEKARLLKGPIEQ |
Parental | ELDVDADFVETSELWSLPPHSETATASSTWQKFAANTGKAKDIPIPNLPPLDFPSPELPLMELSEDILKG |
ELDV.ADFVETSELWSLPPHSETATASSTWQKFA.NT.KAKDIPIP.L.PLDF.SPELPL.ELSEDILKG | |
Retrocopy | ELDVGADFVETSELWSLPPHSETATASSTWQKFAENTRKAKDIPIPSLSPLDFASPELPLTELSEDILKG |
Parental | FMNN |
FMNN | |
Retrocopy | FMNN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 15 .59 RPM |
SRP007412_cerebellum | 0 .00 RPM | 12 .04 RPM |
SRP007412_heart | 0 .00 RPM | 4 .61 RPM |
SRP007412_kidney | 0 .00 RPM | 9 .88 RPM |
SRP007412_liver | 0 .00 RPM | 33 .57 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_3999 |
Pan troglodytes | retro_ptro_2715 |
Gorilla gorilla | retro_ggor_2685 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000004648 | 3 retrocopies | |
Homo sapiens | ENSG00000148572 | 3 retrocopies | |
Gorilla gorilla | ENSGGOG00000013016 | 2 retrocopies | |
Macropus eugenii | ENSMEUG00000010849 | 3 retrocopies | |
Macaca mulatta | ENSMMUG00000017726 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000017183 | 1 retrocopy | |
Mus musculus | ENSMUSG00000075000 | 2 retrocopies | |
Otolemur garnettii | ENSOGAG00000005856 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000002411 | 3 retrocopies |
retro_pabe_2327, retro_pabe_3285, retro_pabe_3286 ,
|
Pan troglodytes | ENSPTRG00000002539 | 3 retrocopies | |
Rattus norvegicus | ENSRNOG00000000641 | 2 retrocopies | |
Sarcophilus harrisii | ENSSHAG00000004744 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000011341 | 1 retrocopy |