RetrogeneDB ID: | retro_ggor_1920 | ||
Retrocopylocation | Organism: | Gorilla (Gorilla gorilla) | |
Coordinates: | 3:28030051..28030322(-) | ||
Located in intron of: | ENSGGOG00000002819 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MINOS1 | ||
Ensembl ID: | ENSGGOG00000007347 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 81.91 % |
Parental protein coverage: | 98.92 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | GGRPRGKLEARVGNMSESELGRKWDRCLADAVVKIGTGFGLGIVFSLT-FFKRRMWPLAFGSGMGLGMAY |
G.RPRGKLEA.VGN.SE.ELG..WDRCLAD.VVKIGTGFGLGIVFS...F..R.MWPLAF.SGMGLGMAY | |
Retrocopy | GVRPRGKLEALVGNRSELELGQNWDRCLADVVVKIGTGFGLGIVFSPS<FKRR-MWPLAFRSGMGLGMAY |
Parental | SNC-QHDFQAPYLLHGKYVKEQEQ |
SNC...DFQAPYLLHGKYVKEQEQ | |
Retrocopy | SNC<SRDFQAPYLLHGKYVKEQEQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .10 RPM | 72 .65 RPM |
SRP007412_cerebellum | 0 .00 RPM | 44 .68 RPM |
SRP007412_heart | 0 .13 RPM | 52 .16 RPM |
SRP007412_kidney | 0 .00 RPM | 80 .10 RPM |
SRP007412_liver | 0 .00 RPM | 27 .09 RPM |
SRP007412_testis | 0 .10 RPM | 42 .17 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_2761 |
Pan troglodytes | retro_ptro_1868 |
Pongo abelii | retro_pabe_2251 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000006709 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000010942 | 5 retrocopies | |
Homo sapiens | ENSG00000173436 | 3 retrocopies | |
Gallus gallus | ENSGALG00000004039 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000007347 | 4 retrocopies | |
Macaca mulatta | ENSMMUG00000005855 | 2 retrocopies | |
Mus musculus | ENSMUSG00000050608 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000007867 | 2 retrocopies | |
Pongo abelii | ENSPPYG00000001788 | 3 retrocopies | |
Pan troglodytes | ENSPTRG00000000269 | 2 retrocopies | |
Rattus norvegicus | ENSRNOG00000042696 | 2 retrocopies | |
Tarsius syrichta | ENSTSYG00000002903 | 1 retrocopy |