RetrogeneDB ID: | retro_pabe_1513 | ||
Retrocopylocation | Organism: | Orangutan (Pongo abelii) | |
Coordinates: | 17:54507544..54507812(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MINOS1 | ||
Ensembl ID: | ENSPPYG00000001788 | ||
Aliases: | None | ||
Description: | mitochondrial inner membrane organizing system 1 [Source:HGNC Symbol;Acc:32068] |
Percent Identity: | 89.13 % |
Parental protein coverage: | 70.87 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | AERKAGGAG-WG-NMSESELGRKWDRCLADAVVKIGTGFGLGIVFSLTFFKRRMWPLAFGSGMGLGMAYS |
AERKA.GAG.WG.NMSESELGR.WD.CLAD.VVKIGTGFGLGIVFSLTFFKRRMWPLAF.SG.GLGMA.S | |
Retrocopy | AERKARGAG<WG<NMSESELGRQWDQCLADVVVKIGTGFGLGIVFSLTFFKRRMWPLAFSSGTGLGMACS |
Parental | NCQHDFQAPYLLHGKYVKEQEQ |
NC.HDFQAPYLLHGKYVKEQEQ | |
Retrocopy | NC*HDFQAPYLLHGKYVKEQEQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .11 RPM | 68 .84 RPM |
SRP007412_cerebellum | 0 .12 RPM | 41 .95 RPM |
SRP007412_heart | 0 .15 RPM | 77 .97 RPM |
SRP007412_kidney | 0 .03 RPM | 69 .67 RPM |
SRP007412_liver | 0 .06 RPM | 25 .31 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_1857 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000006709 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000010942 | 5 retrocopies | |
Homo sapiens | ENSG00000173436 | 3 retrocopies | |
Gallus gallus | ENSGALG00000004039 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000007347 | 4 retrocopies | |
Macaca mulatta | ENSMMUG00000005855 | 2 retrocopies | |
Mus musculus | ENSMUSG00000050608 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000007867 | 2 retrocopies | |
Pongo abelii | ENSPPYG00000001788 | 3 retrocopies |
retro_pabe_1513 , retro_pabe_2251, retro_pabe_2445,
|
Pan troglodytes | ENSPTRG00000000269 | 2 retrocopies | |
Rattus norvegicus | ENSRNOG00000042696 | 2 retrocopies | |
Tarsius syrichta | ENSTSYG00000002903 | 1 retrocopy |