RetrogeneDB ID: | retro_hsap_2761 | ||
Retrocopylocation | Organism: | Human (Homo sapiens) | |
Coordinates: | 3:27256283..27256509(-) | ||
Located in intron of: | ENSG00000163491 | ||
Retrocopyinformation | Ensembl ID: | ENSG00000224237 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MINOS1 | ||
Ensembl ID: | ENSG00000173436 | ||
Aliases: | MINOS1, C1orf151, MIO10 | ||
Description: | mitochondrial inner membrane organizing system 1 [Source:HGNC Symbol;Acc:32068] |
Percent Identity: | 86.08 % |
Parental protein coverage: | 98.72 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | SESELGRKWDRCLADAVVKIGTGFGLGIVFSLT-FFKRRMWPLAFGSGMGLGMAYSNC-QHDFQAPYLLH |
SE.ELGRKWDRCLAD.VVKIGTGFGLGIVFS...F..R.MWPLAF.SGMGLGMAYSNC..HDFQAPYLLH | |
Retrocopy | SELELGRKWDRCLADVVVKIGTGFGLGIVFSPS<FKRR-MWPLAFRSGMGLGMAYSNC<SHDFQAPYLLH |
Parental | GKYVKEQEQ |
GKYVKEQEQ | |
Retrocopy | GKYVKEQEQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
bodymap2_adipose | 0 .16 RPM | 14 .81 RPM |
bodymap2_adrenal | 0 .00 RPM | 34 .20 RPM |
bodymap2_brain | 0 .28 RPM | 26 .60 RPM |
bodymap2_breast | 1 .40 RPM | 23 .93 RPM |
bodymap2_colon | 1 .12 RPM | 36 .76 RPM |
bodymap2_heart | 0 .04 RPM | 34 .73 RPM |
bodymap2_kidney | 0 .27 RPM | 55 .55 RPM |
bodymap2_liver | 0 .00 RPM | 10 .90 RPM |
bodymap2_lung | 0 .00 RPM | 21 .94 RPM |
bodymap2_lymph_node | 0 .00 RPM | 20 .48 RPM |
bodymap2_ovary | 0 .69 RPM | 30 .90 RPM |
bodymap2_prostate | 0 .02 RPM | 42 .80 RPM |
bodymap2_skeletal_muscle | 0 .00 RPM | 16 .08 RPM |
bodymap2_testis | 0 .40 RPM | 22 .85 RPM |
bodymap2_thyroid | 0 .00 RPM | 26 .42 RPM |
bodymap2_white_blood_cells | 0 .00 RPM | 20 .18 RPM |
Species | RetrogeneDB ID |
---|---|
Pan troglodytes | retro_ptro_1868 |
Gorilla gorilla | retro_ggor_1920 |
Pongo abelii | retro_pabe_2251 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000006709 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000010942 | 5 retrocopies | |
Homo sapiens | ENSG00000173436 | 3 retrocopies |
retro_hsap_1857, retro_hsap_2761 , retro_hsap_2948,
|
Gallus gallus | ENSGALG00000004039 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000007347 | 4 retrocopies | |
Macaca mulatta | ENSMMUG00000005855 | 2 retrocopies | |
Mus musculus | ENSMUSG00000050608 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000007867 | 2 retrocopies | |
Pongo abelii | ENSPPYG00000001788 | 3 retrocopies | |
Pan troglodytes | ENSPTRG00000000269 | 2 retrocopies | |
Rattus norvegicus | ENSRNOG00000042696 | 2 retrocopies | |
Tarsius syrichta | ENSTSYG00000002903 | 1 retrocopy |
Library | Retrogene expression |
---|---|
CEU_NA11831 | 0 .06 RPM |
CEU_NA11843 | 0 .00 RPM |
CEU_NA11930 | 0 .00 RPM |
CEU_NA12004 | 0 .08 RPM |
CEU_NA12400 | 0 .07 RPM |
CEU_NA12751 | 0 .00 RPM |
CEU_NA12760 | 0 .00 RPM |
CEU_NA12827 | 0 .00 RPM |
CEU_NA12872 | 0 .00 RPM |
CEU_NA12873 | 0 .00 RPM |
FIN_HG00183 | 0 .00 RPM |
FIN_HG00277 | 0 .00 RPM |
FIN_HG00315 | 0 .00 RPM |
FIN_HG00321 | 0 .00 RPM |
FIN_HG00328 | 0 .05 RPM |
FIN_HG00338 | 0 .06 RPM |
FIN_HG00349 | 0 .11 RPM |
FIN_HG00375 | 0 .05 RPM |
FIN_HG00377 | 0 .00 RPM |
FIN_HG00378 | 0 .00 RPM |
GBR_HG00099 | 0 .03 RPM |
GBR_HG00111 | 0 .11 RPM |
GBR_HG00114 | 0 .03 RPM |
GBR_HG00119 | 0 .00 RPM |
GBR_HG00131 | 0 .00 RPM |
GBR_HG00133 | 0 .00 RPM |
GBR_HG00134 | 0 .00 RPM |
GBR_HG00137 | 0 .00 RPM |
GBR_HG00142 | 0 .00 RPM |
GBR_HG00143 | 0 .00 RPM |
TSI_NA20512 | 0 .00 RPM |
TSI_NA20513 | 0 .00 RPM |
TSI_NA20518 | 0 .00 RPM |
TSI_NA20532 | 0 .07 RPM |
TSI_NA20538 | 0 .00 RPM |
TSI_NA20756 | 0 .00 RPM |
TSI_NA20765 | 0 .00 RPM |
TSI_NA20771 | 0 .03 RPM |
TSI_NA20786 | 0 .08 RPM |
TSI_NA20798 | 0 .00 RPM |
YRI_NA18870 | 0 .41 RPM |
YRI_NA18907 | 0 .00 RPM |
YRI_NA18916 | 0 .06 RPM |
YRI_NA19093 | 0 .10 RPM |
YRI_NA19099 | 0 .16 RPM |
YRI_NA19114 | 0 .13 RPM |
YRI_NA19118 | 0 .15 RPM |
YRI_NA19213 | 0 .07 RPM |
YRI_NA19214 | 0 .00 RPM |
YRI_NA19223 | 0 .06 RPM |