RetrogeneDB ID: | retro_pabe_2251 | ||
Retrocopylocation | Organism: | Orangutan (Pongo abelii) | |
Coordinates: | 3:119953556..119953854(+) | ||
Located in intron of: | ENSPPYG00000014057 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MINOS1 | ||
Ensembl ID: | ENSPPYG00000001788 | ||
Aliases: | None | ||
Description: | mitochondrial inner membrane organizing system 1 [Source:HGNC Symbol;Acc:32068] |
Percent Identity: | 82.24 % |
Parental protein coverage: | 80.31 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 5 |
Parental | LARLAGVGARG-PAERKAGGAG-WG-NMSESELGRKWDRCLADAVVKIGTGFGLGIVFSLT-FFKRRMWP |
L..LAGVGA.G..AERKAGGAG.WG.N.SE.ELG.KWDRCLADAVVKIGTGFGLGIVFS...F..R.MWP | |
Retrocopy | LGKLAGVGAGG<QAERKAGGAG<WG<NRSELELGLKWDRCLADAVVKIGTGFGLGIVFSPS<FKRR-MWP |
Parental | LAFGSGMGLGMAYSNC-QHDFQAPYLLHGKYVKEQEQ |
LAFGSGMG.GMAYSNC..HDFQAPYLLHGKYVKEQEQ | |
Retrocopy | LAFGSGMGFGMAYSNC<SHDFQAPYLLHGKYVKEQEQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 68 .84 RPM |
SRP007412_cerebellum | 0 .12 RPM | 41 .95 RPM |
SRP007412_heart | 0 .06 RPM | 77 .97 RPM |
SRP007412_kidney | 0 .00 RPM | 69 .67 RPM |
SRP007412_liver | 0 .00 RPM | 25 .31 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_2761 |
Pan troglodytes | retro_ptro_1868 |
Gorilla gorilla | retro_ggor_1920 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000006709 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000010942 | 5 retrocopies | |
Homo sapiens | ENSG00000173436 | 3 retrocopies | |
Gallus gallus | ENSGALG00000004039 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000007347 | 4 retrocopies | |
Macaca mulatta | ENSMMUG00000005855 | 2 retrocopies | |
Mus musculus | ENSMUSG00000050608 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000007867 | 2 retrocopies | |
Pongo abelii | ENSPPYG00000001788 | 3 retrocopies |
retro_pabe_1513, retro_pabe_2251 , retro_pabe_2445,
|
Pan troglodytes | ENSPTRG00000000269 | 2 retrocopies | |
Rattus norvegicus | ENSRNOG00000042696 | 2 retrocopies | |
Tarsius syrichta | ENSTSYG00000002903 | 1 retrocopy |