RetrogeneDB ID:

retro_ggor_2042

Retrocopy
location
Organism:Gorilla (Gorilla gorilla)
Coordinates:4:87123156..87123402(+)
Located in intron of:ENSGGOG00000003170
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:MINOS1
Ensembl ID:ENSGGOG00000007347
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_ggor_2042
GGGAACATGTCTGAGTCAGAGCCAGAGCTCAGCAGGAAGTGAGAGTGGTGTTTGGCAGATGCGGTGGTAAAGATAGGTAC
TGGTTTGGAATTAGGAATTGTTTTCTCACCTAAGCTTCTTTAAAAGAAGAAAGTAGCCATTAGCCTTTAGTTTGGCATGG
AATTAGGAATGGCCTACTCCAGCCATCGGCATAGTTTCCAGGCTCCATGTCTTCTATATGGAACGTGTGTCAAAGAACAG
GAGCAG

ORF - retro_ggor_2042 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 71.43 %
Parental protein coverage: 86.02 %
Number of stop codons detected: 2
Number of frameshifts detected 2


Retrocopy - Parental Gene Alignment:

ParentalGNMSESE--LGRKWDRCLADAVVKIGTGFGLGIVFS-LTFFKRRMWPLAFG-SGMGLGMAYSNCQHDFQA
GNMSESE..L.RK...CLADAVVKIGTG..LGIVFS.L.FFKRR..PLAF...GM.LGMAYS...H.FQA
RetrocopyGNMSESEPELSRK*EWCLADAVVKIGTGLELGIVFS>LSFFKRRK*PLAFS<FGMELGMAYSSHRHSFQA
ParentalPYLLHGKYVKEQEQ
P.LL.G..VKEQEQ
RetrocopyPCLLYGTCVKEQEQ

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)

Expression validation based on RNA-Seq data:
Library Retrocopy expression Parental gene expression
SRP007412_brain_prefrontal_cortex 0 .00 RPM 72 .65 RPM
SRP007412_cerebellum 0 .00 RPM 44 .68 RPM
SRP007412_heart 0 .00 RPM 52 .16 RPM
SRP007412_kidney 0 .00 RPM 80 .10 RPM
SRP007412_liver 0 .00 RPM 27 .09 RPM
SRP007412_testis 0 .00 RPM 42 .17 RPM
Gorilla gorilla was not studied using ChIP-Seq data.
Gorilla gorilla was not studied using EST data.
Gorilla gorilla was not studied using FANTOM5 data.
retro_ggor_2042 was not experimentally validated.

Retrocopy orthology:
Retrocopy retro_ggor_2042 has 4 orthologous retrocopies within eutheria group .

Species RetrogeneDB ID
Homo sapiens retro_hsap_2948
Pan troglodytes retro_ptro_2050
Pongo abelii retro_pabe_2445
Macaca mulatta retro_mmul_1949

Parental genes homology:
Parental genes homology involve 12 parental genes, and 27 retrocopies.

Species Parental gene accession Retrocopies number
Callithrix jacchus ENSCJAG000000067091 retrocopy
Echinops telfairi ENSETEG000000109425 retrocopies
Homo sapiens ENSG000001734363 retrocopies
Gallus gallus ENSGALG000000040391 retrocopy
Gorilla gorilla ENSGGOG00000007347 4 retrocopies
Macaca mulatta ENSMMUG000000058552 retrocopies
Mus musculus ENSMUSG000000506081 retrocopy
Nomascus leucogenys ENSNLEG000000078672 retrocopies
Pongo abelii ENSPPYG000000017883 retrocopies
Pan troglodytes ENSPTRG000000002692 retrocopies
Rattus norvegicus ENSRNOG000000426962 retrocopies
Tarsius syrichta ENSTSYG000000029031 retrocopy



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