RetrogeneDB ID: | retro_mmul_1268 | ||
Retrocopylocation | Organism: | Rhesus macaque (Macaca mulatta) | |
Coordinates: | 16:60287721..60287940(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MINOS1 | ||
Ensembl ID: | ENSMMUG00000005855 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 90.41 % |
Parental protein coverage: | 93.59 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | LGRKWDRCLADAVVKIGTGFGLGIVFSLTFFKRRMWPLAFGSGMGLGMAYSNCQHDFQAPYLLHGKYVKE |
.GRKWD.CLADAVVKIGT.FGLGIVFSLTFFKRRMWPLAF.SG.GLGMAYSNCQHDFQAPYLLHGKYV.. | |
Retrocopy | VGRKWDWCLADAVVKIGTDFGLGIVFSLTFFKRRMWPLAFSSGTGLGMAYSNCQHDFQAPYLLHGKYVNK |
Parental | QEQ |
QEQ | |
Retrocopy | QEQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 37 .54 RPM |
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 42 .92 RPM |
SRP007412_cerebellum | 0 .00 RPM | 33 .19 RPM |
SRP007412_heart | 0 .00 RPM | 82 .91 RPM |
SRP007412_kidney | 0 .00 RPM | 48 .71 RPM |
SRP007412_liver | 0 .08 RPM | 17 .26 RPM |
SRP007412_testis | 0 .04 RPM | 28 .50 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000006709 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000010942 | 5 retrocopies | |
Homo sapiens | ENSG00000173436 | 3 retrocopies | |
Gallus gallus | ENSGALG00000004039 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000007347 | 4 retrocopies | |
Macaca mulatta | ENSMMUG00000005855 | 2 retrocopies |
retro_mmul_1268 , retro_mmul_1949,
|
Mus musculus | ENSMUSG00000050608 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000007867 | 2 retrocopies | |
Pongo abelii | ENSPPYG00000001788 | 3 retrocopies | |
Pan troglodytes | ENSPTRG00000000269 | 2 retrocopies | |
Rattus norvegicus | ENSRNOG00000042696 | 2 retrocopies | |
Tarsius syrichta | ENSTSYG00000002903 | 1 retrocopy |