RetrogeneDB ID:

retro_nleu_1297

Retrocopy
location
Organism:Gibbon (Nomascus leucogenys)
Coordinates:GL397288.1:6373337..6373568(+)
Located in intron of:ENSNLEG00000014881
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:MINOS1
Ensembl ID:ENSNLEG00000007867
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_nleu_1297
TCGGAATCGGAGCTCTGCAGGAAGTGGGACCAGTGCCTGGCAGATGCGGCGGTGAAGATAGGTACTGGTTGTGGATTAGG
AATTGTTTTCTCACTTATCTTCTTTAAAAGAAGAATGTGGCCATTAGCCTTCAGTTCTGGAACAGGATTAGGAATGGCTT
ACTCCAACTGTCAGCATGATTTCCAAGCTCCGTATCTTCTACATGGAAAATATGTCAAAGAGCAGCAGCAG

ORF - retro_nleu_1297 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 89.61 %
Parental protein coverage: 98.72 %
Number of stop codons detected: 0
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalSESELGRKWDRCLADAVVKIGTGFGLGIVFSLTFFKRRMWPLAFGSGMGLGMAYSNCQHDFQAPYLLHGK
SESEL.RKWD.CLADA.VKIGTG.GLGIVFSL.FFKRRMWPLAF.SG.GLGMAYSNCQHDFQAPYLLHGK
RetrocopySESELCRKWDQCLADAAVKIGTGCGLGIVFSLIFFKRRMWPLAFSSGTGLGMAYSNCQHDFQAPYLLHGK
ParentalYVKEQEQ
YVKEQ.Q
RetrocopyYVKEQQQ

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Nomascus leucogenys was not studied using RNA-Seq expression data.
Nomascus leucogenys was not studied using ChIP-Seq data.
Nomascus leucogenys was not studied using EST data.
Nomascus leucogenys was not studied using FANTOM5 data.
retro_nleu_1297 was not experimentally validated.

Retrocopy orthology:
Nomascus leucogenys does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 12 parental genes, and 27 retrocopies.

Species Parental gene accession Retrocopies number
Callithrix jacchus ENSCJAG000000067091 retrocopy
Echinops telfairi ENSETEG000000109425 retrocopies
Homo sapiens ENSG000001734363 retrocopies
Gallus gallus ENSGALG000000040391 retrocopy
Gorilla gorilla ENSGGOG000000073474 retrocopies
Macaca mulatta ENSMMUG000000058552 retrocopies
Mus musculus ENSMUSG000000506081 retrocopy
Nomascus leucogenys ENSNLEG00000007867 2 retrocopies
retro_nleu_1297 , retro_nleu_665,
Pongo abelii ENSPPYG000000017883 retrocopies
Pan troglodytes ENSPTRG000000002692 retrocopies
Rattus norvegicus ENSRNOG000000426962 retrocopies
Tarsius syrichta ENSTSYG000000029031 retrocopy



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