RetrogeneDB ID: | retro_hsap_1463 | ||
Retrocopylocation | Organism: | Human (Homo sapiens) | |
Coordinates: | 14:105302333..105303179(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSG00000196183 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS2 | ||
Ensembl ID: | ENSG00000140988 | ||
Aliases: | RPS2, LLREP3, S2 | ||
Description: | ribosomal protein S2 [Source:HGNC Symbol;Acc:10404] |
Percent Identity: | 94.68 % |
Parental protein coverage: | 96.25 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | GGPGGPGMGNRGGFRGGFGSGIRGRGRGRGRGRGRGRGARGGKAEDKEWMPVTKLGRLVKDMKIKSLEEI |
GGPGGPGMGNRG.FRGGFGSGIRGRGRGRGRG.G.G.GARGGKAEDKEWMPVTKLGRLVK.MKIKSLEEI | |
Retrocopy | GGPGGPGMGNRGAFRGGFGSGIRGRGRGRGRGQGQGCGARGGKAEDKEWMPVTKLGRLVKEMKIKSLEEI |
Parental | YLFSLPIKESEIIDFFLGASLKDEVLKIMPVQKQTRAGQRTRFKAFVAIGDYNGHVGLGVKCSKEVATAI |
YLFSLPIKESEIID.FLGASLKDEVLKIM.VQKQTRAGQRTRFKAF.AIGDYNGHVGLGVKCSKEVATAI | |
Retrocopy | YLFSLPIKESEIIDVFLGASLKDEVLKIMLVQKQTRAGQRTRFKAFFAIGDYNGHVGLGVKCSKEVATAI |
Parental | RGAIILAKLSIVPVRRGYWGNKIGKPHTVPCKVTGRCGSVLVRLIPAPRGTGIVSAPVPKKLLMMAGIDD |
RGAIILAKLSIVPV.RGYWGNKIGKPHTVPCKVTGRCGSV..RLIPA..GTGIVSAPVPKKLLMMAGIDD | |
Retrocopy | RGAIILAKLSIVPVHRGYWGNKIGKPHTVPCKVTGRCGSVPARLIPAHGGTGIVSAPVPKKLLMMAGIDD |
Parental | CYTSARGCTATLGNFAKATFDAISKTYSYLTPDLWKETVFTKSPYQEFTDHLVKTHTRVSVQRTQAPAVA |
CYTSARGCTATLGNFAKATFDAISKTYSYLTP.LWKETVFTKSPYQEFTDHLVKTHTRVSVQ.TQAPAVA | |
Retrocopy | CYTSARGCTATLGNFAKATFDAISKTYSYLTPNLWKETVFTKSPYQEFTDHLVKTHTRVSVQWTQAPAVA |
Parental | TT |
TT | |
Retrocopy | TT |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
bodymap2_adipose | 0 .00 RPM | 496 .47 RPM |
bodymap2_adrenal | 0 .10 RPM | 505 .10 RPM |
bodymap2_brain | 0 .05 RPM | 53 .79 RPM |
bodymap2_breast | 0 .00 RPM | 261 .89 RPM |
bodymap2_colon | 0 .02 RPM | 444 .16 RPM |
bodymap2_heart | 0 .00 RPM | 116 .21 RPM |
bodymap2_kidney | 0 .00 RPM | 179 .65 RPM |
bodymap2_liver | 0 .00 RPM | 249 .89 RPM |
bodymap2_lung | 0 .00 RPM | 464 .79 RPM |
bodymap2_lymph_node | 0 .02 RPM | 651 .42 RPM |
bodymap2_ovary | 0 .02 RPM | 445 .62 RPM |
bodymap2_prostate | 0 .02 RPM | 603 .00 RPM |
bodymap2_skeletal_muscle | 0 .05 RPM | 731 .68 RPM |
bodymap2_testis | 0 .00 RPM | 238 .89 RPM |
bodymap2_thyroid | 0 .00 RPM | 257 .52 RPM |
bodymap2_white_blood_cells | 0 .02 RPM | 782 .33 RPM |
Library | Retrogene expression |
---|---|
CEU_NA11831 | 0 .13 RPM |
CEU_NA11843 | 0 .14 RPM |
CEU_NA11930 | 0 .13 RPM |
CEU_NA12004 | 0 .11 RPM |
CEU_NA12400 | 0 .18 RPM |
CEU_NA12751 | 0 .15 RPM |
CEU_NA12760 | 0 .18 RPM |
CEU_NA12827 | 0 .19 RPM |
CEU_NA12872 | 0 .05 RPM |
CEU_NA12873 | 0 .32 RPM |
FIN_HG00183 | 0 .25 RPM |
FIN_HG00277 | 0 .26 RPM |
FIN_HG00315 | 0 .14 RPM |
FIN_HG00321 | 0 .21 RPM |
FIN_HG00328 | 0 .02 RPM |
FIN_HG00338 | 0 .04 RPM |
FIN_HG00349 | 0 .11 RPM |
FIN_HG00375 | 0 .12 RPM |
FIN_HG00377 | 0 .15 RPM |
FIN_HG00378 | 0 .15 RPM |
GBR_HG00099 | 0 .17 RPM |
GBR_HG00111 | 0 .11 RPM |
GBR_HG00114 | 0 .08 RPM |
GBR_HG00119 | 0 .10 RPM |
GBR_HG00131 | 0 .14 RPM |
GBR_HG00133 | 0 .14 RPM |
GBR_HG00134 | 0 .13 RPM |
GBR_HG00137 | 0 .11 RPM |
GBR_HG00142 | 0 .19 RPM |
GBR_HG00143 | 0 .10 RPM |
TSI_NA20512 | 0 .20 RPM |
TSI_NA20513 | 0 .15 RPM |
TSI_NA20518 | 0 .44 RPM |
TSI_NA20532 | 0 .07 RPM |
TSI_NA20538 | 0 .23 RPM |
TSI_NA20756 | 0 .06 RPM |
TSI_NA20765 | 0 .08 RPM |
TSI_NA20771 | 0 .06 RPM |
TSI_NA20786 | 0 .18 RPM |
TSI_NA20798 | 0 .12 RPM |
YRI_NA18870 | 0 .17 RPM |
YRI_NA18907 | 0 .14 RPM |
YRI_NA18916 | 0 .13 RPM |
YRI_NA19093 | 0 .13 RPM |
YRI_NA19099 | 0 .08 RPM |
YRI_NA19114 | 0 .10 RPM |
YRI_NA19118 | 0 .12 RPM |
YRI_NA19213 | 0 .05 RPM |
YRI_NA19214 | 0 .02 RPM |
YRI_NA19223 | 0 .04 RPM |