RetrogeneDB ID: | retro_hsap_2124 | ||
Retrocopylocation | Organism: | Human (Homo sapiens) | |
Coordinates: | 2:85142909..85143786(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSG00000213399 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS2 | ||
Ensembl ID: | ENSG00000140988 | ||
Aliases: | RPS2, LLREP3, S2 | ||
Description: | ribosomal protein S2 [Source:HGNC Symbol;Acc:10404] |
Percent Identity: | 95.93 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | MADDAGAAGGPGG-PGGPGMGNRGGFRGGFGSGIRGRGRGRGRGRG-RGRGARGGKAEDKEWMPVTKLGR |
MADDAGAAGGP...PGG.G.GNRGGF.GGFGSGIRGRGRG.GRGR..RGRGARGGKAEDKEWMPVTKLGR | |
Retrocopy | MADDAGAAGGPRA<PGGHGIGNRGGFHGGFGSGIRGRGRGSGRGRA<RGRGARGGKAEDKEWMPVTKLGR |
Parental | LVKDMKIKSLEEIYLFSLPIKESEIIDFFLGASLKDEVLKIMPVQKQTRAGQRTRFKAFVAIGDYNGHVG |
LVKDMKIKSLEEIYLFSLPIKESEIIDFFLG.SLKDEVLKIMPVQKQTRAGQRTRFKAFVAIGDYNGHVG | |
Retrocopy | LVKDMKIKSLEEIYLFSLPIKESEIIDFFLGDSLKDEVLKIMPVQKQTRAGQRTRFKAFVAIGDYNGHVG |
Parental | LGVKCSKEVATAIRGAIILAKLSIVPVRRGYWGNKIGKPHTVPCKVTGRCGSVLVRLIPAPRGTGIVSAP |
LGVKCSKEVATAIRGAIILAKLSIVPVRRGYWGNKIGKPHTVPCKVTGRCGSVLVRLIPAPRGTGIVSAP | |
Retrocopy | LGVKCSKEVATAIRGAIILAKLSIVPVRRGYWGNKIGKPHTVPCKVTGRCGSVLVRLIPAPRGTGIVSAP |
Parental | VPKKLLMMAGIDDCYTSARGCTATLGNFAKATFDAISKTYSYLTPDLWKETVFTKSPYQEFTDHLVKTHT |
VPKKLLMMAGIDDCYTSARGCTATLGNFAKATFDAISKTYSYLTPDLWKETVFTKSPYQEFTDHLVKTHT | |
Retrocopy | VPKKLLMMAGIDDCYTSARGCTATLGNFAKATFDAISKTYSYLTPDLWKETVFTKSPYQEFTDHLVKTHT |
Parental | RVSVQRTQAPAVATT |
RVSVQRTQA..VATT | |
Retrocopy | RVSVQRTQASDVATT |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
bodymap2_adipose | 0 .10 RPM | 496 .47 RPM |
bodymap2_adrenal | 0 .18 RPM | 505 .10 RPM |
bodymap2_brain | 0 .07 RPM | 53 .79 RPM |
bodymap2_breast | 0 .08 RPM | 261 .89 RPM |
bodymap2_colon | 0 .02 RPM | 444 .16 RPM |
bodymap2_heart | 0 .02 RPM | 116 .21 RPM |
bodymap2_kidney | 0 .02 RPM | 179 .65 RPM |
bodymap2_liver | 0 .09 RPM | 249 .89 RPM |
bodymap2_lung | 0 .09 RPM | 464 .79 RPM |
bodymap2_lymph_node | 0 .04 RPM | 651 .42 RPM |
bodymap2_ovary | 0 .04 RPM | 445 .62 RPM |
bodymap2_prostate | 0 .05 RPM | 603 .00 RPM |
bodymap2_skeletal_muscle | 0 .27 RPM | 731 .68 RPM |
bodymap2_testis | 0 .04 RPM | 238 .89 RPM |
bodymap2_thyroid | 0 .04 RPM | 257 .52 RPM |
bodymap2_white_blood_cells | 0 .14 RPM | 782 .33 RPM |
Library | Retrogene expression |
---|---|
CEU_NA11831 | 3 .40 RPM |
CEU_NA11843 | 2 .82 RPM |
CEU_NA11930 | 2 .48 RPM |
CEU_NA12004 | 0 .91 RPM |
CEU_NA12400 | 2 .39 RPM |
CEU_NA12751 | 1 .41 RPM |
CEU_NA12760 | 3 .19 RPM |
CEU_NA12827 | 1 .23 RPM |
CEU_NA12872 | 1 .63 RPM |
CEU_NA12873 | 3 .51 RPM |
FIN_HG00183 | 2 .47 RPM |
FIN_HG00277 | 2 .44 RPM |
FIN_HG00315 | 1 .38 RPM |
FIN_HG00321 | 2 .93 RPM |
FIN_HG00328 | 0 .97 RPM |
FIN_HG00338 | 2 .60 RPM |
FIN_HG00349 | 1 .08 RPM |
FIN_HG00375 | 2 .13 RPM |
FIN_HG00377 | 2 .40 RPM |
FIN_HG00378 | 2 .21 RPM |
GBR_HG00099 | 1 .34 RPM |
GBR_HG00111 | 1 .40 RPM |
GBR_HG00114 | 2 .76 RPM |
GBR_HG00119 | 1 .70 RPM |
GBR_HG00131 | 1 .95 RPM |
GBR_HG00133 | 1 .21 RPM |
GBR_HG00134 | 1 .83 RPM |
GBR_HG00137 | 2 .36 RPM |
GBR_HG00142 | 0 .81 RPM |
GBR_HG00143 | 1 .05 RPM |
TSI_NA20512 | 2 .18 RPM |
TSI_NA20513 | 1 .09 RPM |
TSI_NA20518 | 2 .61 RPM |
TSI_NA20532 | 0 .44 RPM |
TSI_NA20538 | 1 .98 RPM |
TSI_NA20756 | 1 .75 RPM |
TSI_NA20765 | 1 .99 RPM |
TSI_NA20771 | 3 .06 RPM |
TSI_NA20786 | 2 .80 RPM |
TSI_NA20798 | 3 .02 RPM |
YRI_NA18870 | 2 .64 RPM |
YRI_NA18907 | 2 .15 RPM |
YRI_NA18916 | 2 .76 RPM |
YRI_NA19093 | 2 .39 RPM |
YRI_NA19099 | 2 .18 RPM |
YRI_NA19114 | 3 .85 RPM |
YRI_NA19118 | 2 .44 RPM |
YRI_NA19213 | 1 .15 RPM |
YRI_NA19214 | 1 .62 RPM |
YRI_NA19223 | 0 .99 RPM |