RetrogeneDB ID: | retro_hsap_4075 | ||
Retrocopylocation | Organism: | Human (Homo sapiens) | |
Coordinates: | 8:73530962..73531616(-) | ||
Located in intron of: | ENSG00000182674 | ||
Retrocopyinformation | Ensembl ID: | ENSG00000253226 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | HAUS1 | ||
Ensembl ID: | ENSG00000152240 | ||
Aliases: | HAUS1, CCDC5, HEI-C, HEIC, HsT1461 | ||
Description: | HAUS augmin-like complex, subunit 1 [Source:HGNC Symbol;Acc:25174] |
Percent Identity: | 76.58 % |
Parental protein coverage: | 78.78 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 3 |
Parental | KQKASEYESEAKYLQDLLMESVNFSPANLSSTGSRYLNALVDSA-VALETKDTSLASFIPAVNDLTSDL- |
.QKASEY.SEAK.LQDLLMESVNFSPANLSSTGSRYLNALVDS...ALETKDTSLA.FIPAVN..TSDL. | |
Retrocopy | RQKASEYKSEAKPLQDLLMESVNFSPANLSSTGSRYLNALVDST<IALETKDTSLARFIPAVNNSTSDL< |
Parental | FRTKSK-SEEIKIELEKLEKNLTATLVLEKCLQEDVKKAELHLSTERAKVDNRRQNMDFLKAKSEEFRFG |
F....K..EEIKIE.E.L...LTATL.LEKC..ED.KK.E.HLS.ER.KVD...QN.D.LK.KS.EFRF. | |
Retrocopy | FKQNPK<TEEIKIEWENLXXXLTATLILEKCQKEDLKKVEFHLSLERVKVDGHLQNRDVLKTKSVEFRFE |
Parental | IKAAEEQLSARGMDASLSHQSLVALSEKLARLKQQTIPLKKKLESYLDLMPNPSLAQVKIEEAKRELDSI |
IKAAEE.LSARGMDAS..HQSLVA.SEKLA.LK..TIPLKKK.E.YLDLM.NPSLAQVKIEEAKREL.S. | |
Retrocopy | IKAAEESLSARGMDASPFHQSLVAVSEKLAELKR*TIPLKKKMEFYLDLMLNPSLAQVKIEEAKRELGST |
Parental | EAELTRRVDMME |
EAELT..VD.ME | |
Retrocopy | EAELTKKVDKME |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
bodymap2_adipose | 0 .00 RPM | 12 .92 RPM |
bodymap2_adrenal | 0 .00 RPM | 16 .40 RPM |
bodymap2_brain | 0 .00 RPM | 5 .44 RPM |
bodymap2_breast | 0 .00 RPM | 9 .01 RPM |
bodymap2_colon | 0 .00 RPM | 11 .68 RPM |
bodymap2_heart | 0 .00 RPM | 4 .45 RPM |
bodymap2_kidney | 0 .00 RPM | 10 .75 RPM |
bodymap2_liver | 0 .00 RPM | 4 .96 RPM |
bodymap2_lung | 0 .00 RPM | 7 .74 RPM |
bodymap2_lymph_node | 0 .00 RPM | 12 .59 RPM |
bodymap2_ovary | 0 .00 RPM | 15 .98 RPM |
bodymap2_prostate | 0 .00 RPM | 19 .78 RPM |
bodymap2_skeletal_muscle | 0 .00 RPM | 1 .44 RPM |
bodymap2_testis | 0 .00 RPM | 21 .74 RPM |
bodymap2_thyroid | 0 .00 RPM | 12 .84 RPM |
bodymap2_white_blood_cells | 0 .00 RPM | 14 .81 RPM |
Species | RetrogeneDB ID |
---|---|
Pan troglodytes | retro_ptro_2762 |
Pongo abelii | retro_pabe_3344 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000001139 | 3 retrocopies | |
Homo sapiens | ENSG00000152240 | 3 retrocopies |
retro_hsap_3247, retro_hsap_4075 , retro_hsap_4655,
|
Gorilla gorilla | ENSGGOG00000010098 | 2 retrocopies | |
Loxodonta africana | ENSLAFG00000010897 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000003124 | 2 retrocopies | |
Monodelphis domestica | ENSMODG00000003208 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000011216 | 3 retrocopies | |
Pongo abelii | ENSPPYG00000009131 | 3 retrocopies | |
Pan troglodytes | ENSPTRG00000009992 | 3 retrocopies | |
Tupaia belangeri | ENSTBEG00000010911 | 4 retrocopies |
Library | Retrogene expression |
---|---|
CEU_NA11831 | 0 .00 RPM |
CEU_NA11843 | 0 .00 RPM |
CEU_NA11930 | 0 .00 RPM |
CEU_NA12004 | 0 .00 RPM |
CEU_NA12400 | 0 .00 RPM |
CEU_NA12751 | 0 .00 RPM |
CEU_NA12760 | 0 .00 RPM |
CEU_NA12827 | 0 .00 RPM |
CEU_NA12872 | 0 .00 RPM |
CEU_NA12873 | 0 .00 RPM |
FIN_HG00183 | 0 .00 RPM |
FIN_HG00277 | 0 .00 RPM |
FIN_HG00315 | 0 .00 RPM |
FIN_HG00321 | 0 .00 RPM |
FIN_HG00328 | 0 .00 RPM |
FIN_HG00338 | 0 .00 RPM |
FIN_HG00349 | 0 .00 RPM |
FIN_HG00375 | 0 .00 RPM |
FIN_HG00377 | 0 .00 RPM |
FIN_HG00378 | 0 .00 RPM |
GBR_HG00099 | 0 .00 RPM |
GBR_HG00111 | 0 .00 RPM |
GBR_HG00114 | 0 .00 RPM |
GBR_HG00119 | 0 .00 RPM |
GBR_HG00131 | 0 .00 RPM |
GBR_HG00133 | 0 .00 RPM |
GBR_HG00134 | 0 .00 RPM |
GBR_HG00137 | 0 .00 RPM |
GBR_HG00142 | 0 .00 RPM |
GBR_HG00143 | 0 .00 RPM |
TSI_NA20512 | 0 .00 RPM |
TSI_NA20513 | 0 .00 RPM |
TSI_NA20518 | 0 .00 RPM |
TSI_NA20532 | 0 .00 RPM |
TSI_NA20538 | 0 .00 RPM |
TSI_NA20756 | 0 .00 RPM |
TSI_NA20765 | 0 .00 RPM |
TSI_NA20771 | 0 .00 RPM |
TSI_NA20786 | 0 .00 RPM |
TSI_NA20798 | 0 .00 RPM |
YRI_NA18870 | 0 .00 RPM |
YRI_NA18907 | 0 .00 RPM |
YRI_NA18916 | 0 .00 RPM |
YRI_NA19093 | 0 .00 RPM |
YRI_NA19099 | 0 .00 RPM |
YRI_NA19114 | 0 .00 RPM |
YRI_NA19118 | 0 .00 RPM |
YRI_NA19213 | 0 .00 RPM |
YRI_NA19214 | 0 .00 RPM |
YRI_NA19223 | 0 .00 RPM |