RetrogeneDB ID:

retro_nleu_1698

Retrocopy
location
Organism:Gibbon (Nomascus leucogenys)
Coordinates:GL397305.1:7997252..7997875(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:HAUS1
Ensembl ID:ENSNLEG00000011216
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_nleu_1698
TATCTTCAAGACCTTCTCATGGATAGTGTGAATTTTTCCCCTGCCAATTTCTCTAGCACTGGTTCCAGGTACCTGAATGC
ATTGGTTGACAGTGCAGTGGCCCTTGAAAAAAAGGATACCTCACTAGCTAGTTTAATCCTTGCAGTGAATGATTTGACCT
CTGATCTCTTTCGTACCAAATCCAAAGGTGAAGAAATCAAGATCGAACTGGAAAAACTTGAAAAAAATCTAACTGCAACT
TAATATTAGAAAAATGTCTACAAGAGGATCTCAAGAAAGCAGAGTTGGATCTGTCTACAGAAAGGGCCAAAGTTGATAAT
CGTCGTCAGAACATGGACTTTCTAAAAGCAAAGTCAGAGGAATTCAGATTTGGAATCAAGGCTGCAGAGGAGCAACTTTC
AGCCAGAGGCATGGATGCTTCTCTGTCTCATCAGTCCCTAGTAGCACTGTCAGAGAAACTGGCAAAATTAAAACAACAGA
CTATACCTTTGAAGAAAAAATTTGAGTCCTATTTAGACTTAATGCTGAATTCCCCTCTTGCTCAAGTGAAAATTGAAGAA
GCAAAGTGAGAATTAGATAGCATTGAAGCTGAACTTACAAGGAGAGTAGACATGATGGAACTG

ORF - retro_nleu_1698 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 92.34 %
Parental protein coverage: 74.82 %
Number of stop codons detected: 1
Number of frameshifts detected 1


Retrocopy - Parental Gene Alignment:

ParentalYLQDLLMESVNFSPANVSSTGSRYLNALVDSAVALETKDTSLASFIPAVNDLTSDLFRTKSKSEEIKIEL
YLQDLLM.SVNFSPAN.SSTGSRYLNALVDSAVALE.KDTSLAS.I.AVNDLTSDLFRTKSK.EEIKIEL
RetrocopyYLQDLLMDSVNFSPANFSSTGSRYLNALVDSAVALEKKDTSLASLILAVNDLTSDLFRTKSKGEEIKIEL
ParentalEKLEKNLTAT-LVLEKCLQEDIKKAELHLSTERAKVDNRRQNMDFLKAKSEEFRFGIKAAEEQLSARGMD
EKLEKNLTAT.L.LEKCLQED.KKAEL.LSTERAKVDNRRQNMDFLKAKSEEFRFGIKAAEEQLSARGMD
RetrocopyEKLEKNLTAT<LILEKCLQEDLKKAELDLSTERAKVDNRRQNMDFLKAKSEEFRFGIKAAEEQLSARGMD
ParentalASLSHQSLVALSEKLARLKQQTIPLKKKLESYLDLMPNPSLAQVKIEEAKRELDSIEAELTRRVDMMEL
ASLSHQSLVALSEKLA.LKQQTIPLKKK.ESYLDLM.N..LAQVKIEEAK.ELDSIEAELTRRVDMMEL
RetrocopyASLSHQSLVALSEKLAKLKQQTIPLKKKFESYLDLMLNSPLAQVKIEEAK*ELDSIEAELTRRVDMMEL

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Nomascus leucogenys was not studied using RNA-Seq expression data.
Nomascus leucogenys was not studied using ChIP-Seq data.
Nomascus leucogenys was not studied using EST data.
Nomascus leucogenys was not studied using FANTOM5 data.
retro_nleu_1698 was not experimentally validated.

Retrocopy orthology:
Nomascus leucogenys does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 10 parental genes, and 25 retrocopies.

Species Parental gene accession Retrocopies number
Choloepus hoffmanni ENSCHOG000000011393 retrocopies
Homo sapiens ENSG000001522403 retrocopies
Gorilla gorilla ENSGGOG000000100982 retrocopies
Loxodonta africana ENSLAFG000000108971 retrocopy
Macaca mulatta ENSMMUG000000031242 retrocopies
Monodelphis domestica ENSMODG000000032081 retrocopy
Nomascus leucogenys ENSNLEG00000011216 3 retrocopies
retro_nleu_1091, retro_nleu_1698 , retro_nleu_2043,
Pongo abelii ENSPPYG000000091313 retrocopies
Pan troglodytes ENSPTRG000000099923 retrocopies
Tupaia belangeri ENSTBEG000000109114 retrocopies



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