RetrogeneDB ID: | retro_mmul_2476 | ||
Retrocopylocation | Organism: | Rhesus macaque (Macaca mulatta) | |
Coordinates: | X:16617760..16618090(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | HAUS1 | ||
Ensembl ID: | ENSMMUG00000003124 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 83.64 % |
Parental protein coverage: | 54.46 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 0 |
Parental | SIERAKVDNRRQNMDFLKAKSEEFRFGIKAAEEQLSARGMDASLSHQSLVALSEKLARLKQQTIPLKKKL |
S..R....NR.QNMDFLK.KSEEFRFGIKAAEE.LS.RG.DASLSHQSLVALSEKLA..KQQTIPLKKKL | |
Retrocopy | SFMRPSFNNRHQNMDFLKPKSEEFRFGIKAAEERLSTRGADASLSHQSLVALSEKLAK*KQQTIPLKKKL |
Parental | ESYLDLMPNPSLARVKIEEAKRELDSIEAELTRRVDMMEL |
ES.LD.MPNPSLA.VKIE.AKRELDSIEAELTRRVDM.EL | |
Retrocopy | ES*LDFMPNPSLAQVKIEAAKRELDSIEAELTRRVDMIEL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 4 .15 RPM |
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 2 .46 RPM |
SRP007412_cerebellum | 0 .00 RPM | 8 .46 RPM |
SRP007412_heart | 0 .00 RPM | 2 .89 RPM |
SRP007412_kidney | 0 .00 RPM | 3 .64 RPM |
SRP007412_liver | 0 .00 RPM | 1 .19 RPM |
SRP007412_testis | 0 .00 RPM | 4 .60 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000001139 | 3 retrocopies | |
Homo sapiens | ENSG00000152240 | 3 retrocopies | |
Gorilla gorilla | ENSGGOG00000010098 | 2 retrocopies | |
Loxodonta africana | ENSLAFG00000010897 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000003124 | 2 retrocopies |
retro_mmul_2043, retro_mmul_2476 ,
|
Monodelphis domestica | ENSMODG00000003208 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000011216 | 3 retrocopies | |
Pongo abelii | ENSPPYG00000009131 | 3 retrocopies | |
Pan troglodytes | ENSPTRG00000009992 | 3 retrocopies | |
Tupaia belangeri | ENSTBEG00000010911 | 4 retrocopies |