RetrogeneDB ID: | retro_pabe_3344 | ||
Retrocopylocation | Organism: | Orangutan (Pongo abelii) | |
Coordinates: | 8:75075624..75076278(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | HAUS1 | ||
Ensembl ID: | ENSPPYG00000009131 | ||
Aliases: | None | ||
Description: | HAUS augmin-like complex, subunit 1 [Source:HGNC Symbol;Acc:25174] |
Percent Identity: | 77.48 % |
Parental protein coverage: | 78.78 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 3 |
Parental | KQKASEYESEAKYLQDLLMESVNFSPANLSSTGSRYLNALVDSA-VALETKDTSLASFIPAVNDLTSDLF |
.QKASEY.SEAK.LQDLLME..NFSPANLSSTGSRYLNALVDS...ALETKDTS.A.FIPAVN..T.DLF | |
Retrocopy | RQKASEYKSEAKPLQDLLMEGMNFSPANLSSTGSRYLNALVDST<IALETKDTSPARFIPAVNNSTFDLF |
Parental | R-TKSKSEEIKIELEKLEKN-LTATLVLEKCLQEDVKKAELHLSTERAKVDNRRQNMDFLKAKSEEFRFG |
..TKS..EEIKIE.E.LEK..LTATLVLEKC.QED.KK.E.HLS.ER.KV....QN.D.LKAKSEEFRF. | |
Retrocopy | K<TKSQTEEIKIEWENLEKY<LTATLVLEKCQQEDLKKVEFHLSLERVKVNGHLQNRDVLKAKSEEFRFE |
Parental | IKAAEEQLSARGMDASLSHQSLVALSEKLARLKQQTIPLKKKLESYLDLMPNPSLAQVKIEEAKRELDSI |
IKAAEE.LSARGM.AS..HQSLVA.SEKLA.LK.QTIPLKKK.E.YLDLM.NPSLAQVK.EEAKREL.S. | |
Retrocopy | IKAAEEPLSARGMAASPFHQSLVAVSEKLAELK*QTIPLKKKMEFYLDLMLNPSLAQVKTEEAKRELGSN |
Parental | EAELTRRVDMME |
EAELT..VD.ME | |
Retrocopy | EAELTKKVDTME |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 2 .21 RPM |
SRP007412_cerebellum | 0 .00 RPM | 3 .04 RPM |
SRP007412_heart | 0 .00 RPM | 1 .87 RPM |
SRP007412_kidney | 0 .00 RPM | 1 .76 RPM |
SRP007412_liver | 0 .00 RPM | 1 .10 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_4075 |
Pan troglodytes | retro_ptro_2762 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000001139 | 3 retrocopies | |
Homo sapiens | ENSG00000152240 | 3 retrocopies | |
Gorilla gorilla | ENSGGOG00000010098 | 2 retrocopies | |
Loxodonta africana | ENSLAFG00000010897 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000003124 | 2 retrocopies | |
Monodelphis domestica | ENSMODG00000003208 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000011216 | 3 retrocopies | |
Pongo abelii | ENSPPYG00000009131 | 3 retrocopies |
retro_pabe_2693, retro_pabe_3344 , retro_pabe_3615,
|
Pan troglodytes | ENSPTRG00000009992 | 3 retrocopies | |
Tupaia belangeri | ENSTBEG00000010911 | 4 retrocopies |