RetrogeneDB ID: | retro_nleu_2043 | ||
Retrocopylocation | Organism: | Gibbon (Nomascus leucogenys) | |
Coordinates: | GL397324.1:584977..585636(-) | ||
Located in intron of: | ENSNLEG00000001288 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | HAUS1 | ||
Ensembl ID: | ENSNLEG00000011216 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 74.89 % |
Parental protein coverage: | 78.78 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 3 |
Parental | KQKASEYESEAKYLQDLLMESVNFSPANVSSTGSRYLNALVDSA-VALETKDTSLASFIPAVNDLTSDLF |
.QKASEYESEAK.LQDLLMESVNFS.AN.SSTGSRYLNALV.S...ALETKDTSLA.FIPAVN..TSDLF | |
Retrocopy | RQKASEYESEAKPLQDLLMESVNFSLANLSSTGSRYLNALVEST<MALETKDTSLARFIPAVNNSTSDLF |
Parental | R-TKSKSEEIKIELEK-LEKNLTATLVLEKCLQEDIKKAELHLSTERAKVDNRRQNMDFLKAKSEEFRFG |
..TKS...EIKIE.E..L...L..TLVLEKC.QED.KK.E..LS.ER.KV....QN.D.L.AKSE.FRF. | |
Retrocopy | K<TKSQTKEIKIEWED>LXXXLATTLVLEKCQQEDLKKVEFPLSLERVKVNGHLQNRDVLQAKSEKFRFE |
Parental | IKAAEEQLSARGMDASLS-HQSLVALSEKLARLKQQTIPLKKKLESYLDLMPNPSLAQVKIEEAKRELDS |
IKAAEE.LSARGMDAS...HQSLVA.SEKLA.LK.QTIPLKKK.E.YLDLM.NPSLAQVKIEEAKREL.. | |
Retrocopy | IKAAEEPLSARGMDASSPFHQSLVAVSEKLAELKRQTIPLKKKMEFYLDLMLNPSLAQVKIEEAKRELGR |
Parental | IEAELTRRVDMME |
.EAELT..VD.ME | |
Retrocopy | TEAELTKKVDTME |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000001139 | 3 retrocopies | |
Homo sapiens | ENSG00000152240 | 3 retrocopies | |
Gorilla gorilla | ENSGGOG00000010098 | 2 retrocopies | |
Loxodonta africana | ENSLAFG00000010897 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000003124 | 2 retrocopies | |
Monodelphis domestica | ENSMODG00000003208 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000011216 | 3 retrocopies |
retro_nleu_1091, retro_nleu_1698, retro_nleu_2043 ,
|
Pongo abelii | ENSPPYG00000009131 | 3 retrocopies | |
Pan troglodytes | ENSPTRG00000009992 | 3 retrocopies | |
Tupaia belangeri | ENSTBEG00000010911 | 4 retrocopies |