RetrogeneDB ID: | retro_ptro_3092 | ||
Retrocopylocation | Organism: | Chimpanzee (Pan troglodytes) | |
Coordinates: | X:19045352..19046130(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | HAUS1 | ||
Ensembl ID: | ENSPTRG00000009992 | ||
Aliases: | HAUS1, CCDC5 | ||
Description: | HAUS augmin-like complex, subunit 1 [Source:HGNC Symbol;Acc:25174] |
Percent Identity: | 86.74 % |
Parental protein coverage: | 93.17 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 5 |
Parental | GDHPIPQYEVNPRTTEILHHLSERNR-VRDRDVYLVIEDLKQKASEYESEAKYLQDLLMESVN-FSPANL |
GDHPIPQYEVNPRTTEILHHLSE.NR.V.DRDVYLVIEDLKQKASEY.SEAKYLQDLLMESVN.FSPANL | |
Retrocopy | GDHPIPQYEVNPRTTEILHHLSEHNR<VQDRDVYLVIEDLKQKASEYQSEAKYLQDLLMESVN>FSPANL |
Parental | SSTGSRYLNALVDSAVALETKDTSLASFIPAVNDLTSDLFRTKSKSEEIKIELEKLEKNLTATLVLEK-C |
SSTGSRYLNALV.SAVALETKD.SL.SFIP.VNDLTS.LFRTKSKSEEIKIEL..............K.C | |
Retrocopy | SSTGSRYLNALVGSAVALETKDASLTSFIPVVNDLTSYLFRTKSKSEEIKIELXXXXXXSNCNFSIRK>C |
Parental | LQEDVKKAELHLSTERAKVDNRRQNMDFLKAKSEEFRFGIKAAE-EQLSARGMDASLSHQSLVALSEKLA |
LQED.KKAELHLSTERAKVDNR.Q.MDFLK.KS.EFRFGIKAAE.EQLSARGMDASLSHQSLVALSEKLA | |
Retrocopy | LQEDLKKAELHLSTERAKVDNRHQSMDFLKPKSVEFRFGIKAAE>EQLSARGMDASLSHQSLVALSEKLA |
Parental | RLKQQTIPLKKKLESYLDLMPNPS-LAQVKIEEAKRELDSIEAELTRRVDMMEL |
.LKQQTIPLKKKLES.LDLMPNPS.LAQVKIEEA.RELDSIEAELTRRVDMMEL | |
Retrocopy | KLKQQTIPLKKKLES*LDLMPNPS<LAQVKIEEAERELDSIEAELTRRVDMMEL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 1 .88 RPM |
SRP007412_cerebellum | 0 .00 RPM | 3 .94 RPM |
SRP007412_heart | 0 .00 RPM | 1 .92 RPM |
SRP007412_kidney | 0 .00 RPM | 5 .31 RPM |
SRP007412_liver | 0 .00 RPM | 3 .90 RPM |
SRP007412_testis | 0 .11 RPM | 9 .27 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000001139 | 3 retrocopies | |
Homo sapiens | ENSG00000152240 | 3 retrocopies | |
Gorilla gorilla | ENSGGOG00000010098 | 2 retrocopies | |
Loxodonta africana | ENSLAFG00000010897 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000003124 | 2 retrocopies | |
Monodelphis domestica | ENSMODG00000003208 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000011216 | 3 retrocopies | |
Pongo abelii | ENSPPYG00000009131 | 3 retrocopies | |
Pan troglodytes | ENSPTRG00000009992 | 3 retrocopies |
retro_ptro_2195, retro_ptro_2762, retro_ptro_3092 ,
|
Tupaia belangeri | ENSTBEG00000010911 | 4 retrocopies |