RetrogeneDB ID: | retro_pabe_3615 | ||
Retrocopylocation | Organism: | Orangutan (Pongo abelii) | |
Coordinates: | X:18859627..18860406(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | HAUS1 | ||
Ensembl ID: | ENSPPYG00000009131 | ||
Aliases: | None | ||
Description: | HAUS augmin-like complex, subunit 1 [Source:HGNC Symbol;Acc:25174] |
Percent Identity: | 85.93 % |
Parental protein coverage: | 93.17 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 4 |
Parental | GDHPIPQYEVNPRTTEILHHLSERNRVRDRDVYLVIEDLKQKASEYESEAKYLQDLLMESVN-FSPANLS |
GDHPIPQYEVNPRTTEILHHLSERNRV.DRDVY.VIEDLKQKASEY.SEAKYLQDLLMESVN.F.PANLS | |
Retrocopy | GDHPIPQYEVNPRTTEILHHLSERNRVQDRDVYQVIEDLKQKASEYKSEAKYLQDLLMESVN>FFPANLS |
Parental | STGSRYLNALVDSAVALETKDTSLASFIPAVNDLTSDLFRTKSKSEEIKIELEKLEKNLTATLVLEK-CL |
STGSRYLNALV.SAVALETKD.SL.SFIP.VNDLTS.LFRT.SKSEEIKIEL..............K.CL | |
Retrocopy | STGSRYLNALVGSAVALETKDASLTSFIPVVNDLTSYLFRTRSKSEEIKIELXXXXXXSNCNFSIRK>CL |
Parental | QEDVKKAELHLSTERAKVDNRRQNMDFLKAKSEEFRFGIKAAE-EQLSARGMDASLSHQSLVALSEKLAR |
QED..KAELHLSTERAKVDNR.QNMDFLK.KS.EFRFGIKAAE..QLSARGMDASLSHQSLVALSEKLA. | |
Retrocopy | QEDLQKAELHLSTERAKVDNRHQNMDFLKPKSVEFRFGIKAAE>DQLSARGMDASLSHQSLVALSEKLAK |
Parental | LKQQTIPLKKKLESYLDLMPNPSL-AQVKIEEAKRELDSIEAELTRRVDMMEL |
LKQQTIPLKKKLES.LDLMPNPSL.AQVKIEEAK.ELDSIEAELTRRVDMMEL | |
Retrocopy | LKQQTIPLKKKLES*LDLMPNPSL<AQVKIEEAKQELDSIEAELTRRVDMMEL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .06 RPM | 2 .21 RPM |
SRP007412_cerebellum | 0 .00 RPM | 3 .04 RPM |
SRP007412_heart | 0 .00 RPM | 1 .87 RPM |
SRP007412_kidney | 0 .00 RPM | 1 .76 RPM |
SRP007412_liver | 0 .00 RPM | 1 .10 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000001139 | 3 retrocopies | |
Homo sapiens | ENSG00000152240 | 3 retrocopies | |
Gorilla gorilla | ENSGGOG00000010098 | 2 retrocopies | |
Loxodonta africana | ENSLAFG00000010897 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000003124 | 2 retrocopies | |
Monodelphis domestica | ENSMODG00000003208 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000011216 | 3 retrocopies | |
Pongo abelii | ENSPPYG00000009131 | 3 retrocopies |
retro_pabe_2693, retro_pabe_3344, retro_pabe_3615 ,
|
Pan troglodytes | ENSPTRG00000009992 | 3 retrocopies | |
Tupaia belangeri | ENSTBEG00000010911 | 4 retrocopies |