RetrogeneDB ID: | retro_itri_1012 | ||
Retrocopylocation | Organism: | Squirrel (Ictidomys tridecemlineatus) | |
Coordinates: | JH393358.1:6660534..6660930(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | STMN2 | ||
Ensembl ID: | ENSSTOG00000025094 | ||
Aliases: | None | ||
Description: | stathmin-like 2 [Source:HGNC Symbol;Acc:10577] |
Percent Identity: | 66.42 % |
Parental protein coverage: | 95.71 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 3 |
Parental | EVKQINKRASGQAFELILKPPSPISEAPRTLASPKKKDLS-LEEIQKKLEAAEERRKSQEAQVLKQLAEK |
E.KQI...A..QAFELIL.PP.PISE..R.L.SPK.K.LS.L.E.Q.K.EAAEE.RKSQEAQVLKQL.EK | |
Retrocopy | ELKQISRSAPSQAFELILMPPCPISEVQRILVSPKEKTLS<LDEVQEKVEAAEE-RKSQEAQVLKQLREK |
Parental | REHEREVLQKALEENNNFSKMAEEKLILKMEQIKENREAN-LAAIIERLQEKERHAAEV-RRNKELQ |
.E.E......ALEE.NNFSKM.E.KL.LKME.IK.N.EAN.LAAII..LQ.KE.H...V..RNKELQ | |
Retrocopy | KEQEQKSPSEALEESNNFSKMVEQKLTLKMEHIKKNFEAN<LAAIIKYLQKKEKHVLKV<ARNKELQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Dasypus novemcinctus | ENSDNOG00000003373 | 3 retrocopies | |
Mustela putorius furo | ENSMPUG00000001863 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000027869 | 2 retrocopies | |
Oryzias latipes | ENSORLG00000008251 | 1 retrocopy | |
Sorex araneus | ENSSARG00000010989 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000021708 | 5 retrocopies | |
Ictidomys tridecemlineatus | ENSSTOG00000025094 | 2 retrocopies |
retro_itri_1012 , retro_itri_1423,
|
Tarsius syrichta | ENSTSYG00000014759 | 1 retrocopy |