RetrogeneDB ID:

retro_ogar_330

Retrocopy
location
Organism:Bushbaby (Otolemur garnettii)
Coordinates:GL873520.1:28736668..28737050(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:STMN2
Ensembl ID:ENSOGAG00000027869
Aliases:None
Description:stathmin-like 2 [Source:HGNC Symbol;Acc:10577]


Retrocopy-Parental alignment summary:






>retro_ogar_330
AGCCTTAAGCTGATCTTAAAGCCACCATCTCCTATCTCAGAAGCCCCACGAATTTTAGCTTCTCCAAAGAAGAAAGACCT
GTCCCTGAAGAAGATCCAGAAGAAAGTGGAGGCTGCAGCAGAAAGAAAATAGTCTCAGGAGGCGCAGGTGCTGAAACAAT
TGGCAGAGCAGAGGGAACACGAGCGAGAAGTCCTTCAGAAGGCTTTGGGGGAAAACAACAACTTCAACAAGATGGTGGAG
GAAAAGCTGATCCTGAAAATGGAACAAATTAAGGAAAACCGTGAGGTGAATCTAGCTGCTATTTATCGGATGTCTGCAGG
AAAAGGAGAGGCATGCTGCAGAGATGCGCAGGAACAAGGGGCTCCAGGTTAAACTGTCTGGC

ORF - retro_ogar_330 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 83.59 %
Parental protein coverage: 70.56 %
Number of stop codons detected: 1
Number of frameshifts detected 1


Retrocopy - Parental Gene Alignment:

ParentalAFELILKPPSPISEAPRTLASPKKKDLSLEEIQKKLEAAEERRKSQEAQVLKQLAEKREHEREVLQKALE
...LILKPPSPISEAPR.LASPKKKDLSL..IQKK.EAA.ER..SQEAQVLKQLAE.REHEREVLQKAL.
RetrocopySLKLILKPPSPISEAPRILASPKKKDLSLKKIQKKVEAAAERK*SQEAQVLKQLAEQREHEREVLQKALG
ParentalENNNFSKMAEEKLILKMEQIKENREANLAAI-IERLQEKERHAAEVRRNKELQVELSG
ENNNF.KM.EEKLILKMEQIKENRE.NLAAI.I..LQEKERHAAE.RRNK.LQV.LSG
RetrocopyENNNFNKMVEEKLILKMEQIKENREVNLAAI>IGCLQEKERHAAEMRRNKGLQVKLSG

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Otolemur garnettii was not studied using RNA-Seq expression data.
Otolemur garnettii was not studied using ChIP-Seq data.
Otolemur garnettii was not studied using EST data.
Otolemur garnettii was not studied using FANTOM5 data.
retro_ogar_330 was not experimentally validated.

Retrocopy orthology:
Otolemur garnettii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 7 parental genes, and 11 retrocopies.

Species Parental gene accession Retrocopies number
Dasypus novemcinctus ENSDNOG000000033733 retrocopies
Mustela putorius furoENSMPUG000000018631 retrocopy
Otolemur garnettii ENSOGAG00000027869 2 retrocopies
retro_ogar_2664, retro_ogar_330 ,
Oryzias latipes ENSORLG000000082511 retrocopy
Sorex araneus ENSSARG000000109891 retrocopy
Ictidomys tridecemlineatus ENSSTOG000000250942 retrocopies
Tarsius syrichta ENSTSYG000000147591 retrocopy



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