RetrogeneDB ID: retro_mputfur_68

Retrocopy location

• Organism: Ferret (Mustela putorius furo)
• Coordinates: GL896957.1:10722416..10722956(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMPUG00000019948
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSMPUG00000001863
• Aliases: None
• Description: None

Sequence

>retro_mputfur_68
ATGGCTAAAACAGCAATGGCCTACAAGGAAAAAATGAAGGAGCTGTCCATGCTGTCACTGATCTGCTCTTGCTTTTACCC
CGAACCTCGCAACATCAACATCTATACTTATGACGATATGGAAGTGAAGCAAATCAACAAACGTGCCTCTGGCCAGGCTT
TTGAGCTGATCCTGAAGCCACCATCTCCCATCTCAGAAGCCCCACGAACTTTAGCTTCTCCAAAGAAGAAAGACCTGTCT
CTGGAGGAGATCCAGAAAAAACTGGAGGCTGCAGAGGAAAGAAGAAAGTCTCAGGAGACCCAGGTGCTGAAGCAATTGGC
AGAGAAGAGGGAACATGAGCGAGAAGTCCTCCAGAAGGCTTTGGAGGAGAACAACAACTTCAGCAAAATGGCGGAGGAAA
AGCTGATCCTGAAAATGGAACAAATCAAAGAAAACCGTGAGGCTAATCTAGCTGCTATTATTGAACGTCTGCAGGAAAAG
GAGAGGCATGCTGCCGAGGTGCGCAGGAACAAGGAGCTGCAGGTTGAACTTTCTGGCTGA

Alignment

ORF - retro_mputfur_68 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 97.81 %
• Parental protein coverage: 76.97 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  YKEKMKELSMLSLICSCFYPEPRNINIYTYDDMEVKQINKRASGQAFELILKPPSPISEAPRTLASPKKK
          YKEKMKELSMLSLICSCFYPEPRNINIYTYDDMEVKQINKRASGQAFELILKPPSPISEAPRTLASPKKK
Retrocopy YKEKMKELSMLSLICSCFYPEPRNINIYTYDDMEVKQINKRASGQAFELILKPPSPISEAPRTLASPKKK

Parental  DLSLEEIQKKLEAAEERRKSQEAQVLKQLAEKREHEREVLQKALEENNNFSKMAEEKLILKMEQEKD
          DLSLEEIQKKLEAAEERRKSQE.QVLKQLAEKREHEREVLQKALEENNNFSKMAEEKLILKMEQ.K.
Retrocopy DLSLEEIQKKLEAAEERRKSQETQVLKQLAEKREHEREVLQKALEENNNFSKMAEEKLILKMEQIKE

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Mustela putorius furo was not studied using RNA-Seq expression data.

ChIP-Seq

Mustela putorius furo was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mputfur_68 retrocopy.

TSS

Mustela putorius furo was not studied using FANTOM5 data.

Lab

retro_mputfur_68 was not experimentally validated.

Homology

Retrocopy orthology:

Mustela putorius furo does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 9 parental genes, and 13 retrocopies.

Species	Parental gene accession	Retrocopies number
Dasypus novemcinctus	ENSDNOG00000003373	3 retrocopies	retro_dnov_2381, retro_dnov_545, retro_dnov_831,
Dipodomys ordii	ENSDORG00000005974	1 retrocopy	retro_dord_302,
Mustela putorius furo	ENSMPUG00000001863	1 retrocopy	retro_mputfur_68 ,
Mustela putorius furo	ENSMPUG00000015774	1 retrocopy	retro_mputfur_1191,
Otolemur garnettii	ENSOGAG00000027869	2 retrocopies	retro_ogar_2664, retro_ogar_330,
Oryzias latipes	ENSORLG00000008251	1 retrocopy	retro_olat_37,
Sorex araneus	ENSSARG00000010989	1 retrocopy	retro_sara_756,
Ictidomys tridecemlineatus	ENSSTOG00000025094	2 retrocopies	retro_itri_1012, retro_itri_1423,
Tarsius syrichta	ENSTSYG00000014759	1 retrocopy	retro_tsyr_26,