RetrogeneDB ID: | retro_itri_1423 | ||
Retrocopylocation | Organism: | Squirrel (Ictidomys tridecemlineatus) | |
Coordinates: | JH393482.1:3089374..3089659(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | STMN2 | ||
Ensembl ID: | ENSSTOG00000025094 | ||
Aliases: | None | ||
Description: | stathmin-like 2 [Source:HGNC Symbol;Acc:10577] |
Percent Identity: | 50.53 % |
Parental protein coverage: | 67.86 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | QKKLEAAEERRKSQEAQVLKQLAEKREHEREVLQKALEENNNFSKMAEEKLILKMEQIKENREANLAAII |
QK..EAAEE..............E.R....E.....LEE.N.F.K.A.E.L..KM..I.EN.EANL..I. | |
Retrocopy | QKTMEAAEEKEEMSQKARC*NNGERRGRINERSFRRLEEINSFNKLAGEELTMKMKGIEENCEANLIVIT |
Parental | ERLQEKERHAAEVRRNKELQVELSG |
E.LQ.KER.A.EV.RN.ELQVELSG | |
Retrocopy | ECLQGKERQAVEVHRNRELQVELSG |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Dasypus novemcinctus | ENSDNOG00000003373 | 3 retrocopies | |
Mustela putorius furo | ENSMPUG00000001863 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000027869 | 2 retrocopies | |
Oryzias latipes | ENSORLG00000008251 | 1 retrocopy | |
Sorex araneus | ENSSARG00000010989 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000021708 | 5 retrocopies | |
Ictidomys tridecemlineatus | ENSSTOG00000025094 | 2 retrocopies |
retro_itri_1012, retro_itri_1423 ,
|
Tarsius syrichta | ENSTSYG00000014759 | 1 retrocopy |