RetrogeneDB ID: | retro_itri_1058 | ||
Retrocopylocation | Organism: | Squirrel (Ictidomys tridecemlineatus) | |
Coordinates: | JH393365.1:1412255..1412462(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | CKS2 | ||
Ensembl ID: | ENSSTOG00000000048 | ||
Aliases: | None | ||
Description: | CDC28 protein kinase regulatory subunit 2 [Source:HGNC Symbol;Acc:2000] |
Percent Identity: | 78.08 % |
Parental protein coverage: | 92.41 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 0 |
Parental | AHKQIYYSDKYFDEHYEYRHVMLPRELSKQVPKTHLMSEEEWRRLGVQQSLGWVHYMIHEPEPHILLFRR |
AHKQIYYS....D.HY.Y.HV.LPR.LSKQVPKTHLMSEE.WRRL.V.QSL.WVHYMIH.PEPHIL.FR. | |
Retrocopy | AHKQIYYS----DKHYQYQHVILPR*LSKQVPKTHLMSEEKWRRLVV*QSLSWVHYMIHDPEPHILVFRL |
Parental | PLP |
PLP | |
Retrocopy | PLP |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000007792 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000009427 | 8 retrocopies | |
Erinaceus europaeus | ENSEEUG00000004384 | 7 retrocopies | |
Felis catus | ENSFCAG00000022286 | 1 retrocopy | |
Homo sapiens | ENSG00000123975 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000012534 | 1 retrocopy | |
Mus musculus | ENSMUSG00000062248 | 4 retrocopies | |
Nomascus leucogenys | ENSNLEG00000008729 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000028843 | 1 retrocopy | |
Ochotona princeps | ENSOPRG00000007583 | 3 retrocopies | |
Pongo abelii | ENSPPYG00000025843 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000021093 | 1 retrocopy | |
Pteropus vampyrus | ENSPVAG00000011011 | 3 retrocopies | |
Rattus norvegicus | ENSRNOG00000014130 | 5 retrocopies | |
Sorex araneus | ENSSARG00000002443 | 1 retrocopy | |
Sus scrofa | ENSSSCG00000021161 | 2 retrocopies | |
Ictidomys tridecemlineatus | ENSSTOG00000000048 | 7 retrocopies |
retro_itri_1058 , retro_itri_1306, retro_itri_1429, retro_itri_1632, retro_itri_269, retro_itri_585, retro_itri_774,
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