Parental gene:

CKS2, ENSEEUG00000004384

Aliases:None
Description:CDC28 protein kinase regulatory subunit 2 [Source:HGNC Symbol;Acc:2000]
Organism:Hedgehog (Erinaceus europaeus)
Coordinates:GeneScaffold_3111:10793..15940(+)


>ENSEEUG00000004384
ATGGCCCACAAACAGATCTACTATTCGGATAAGTACTTCGACGAGCACTACGAGTATCGGCATGTTATGTTGCCCAGAGA
ACTTTCCAAACAAGTACCCAAAACCCATCTGATGTCTGAAGAGGAGTGGAGGAGACTTGGCGTCCAGCAGAGTCTAGGCT
GGGTTCACTACATGATTCACGAACCAGAACCACATATTCTTCTCTTCAGGCGACCTCTTCCAAAAGATCAACAAAAATGA

Library Parental gene expression (RPM)
SRP017611_brain 4 .83 RPM
SRP017611_kidney 3 .94 RPM
SRP017611_liver 1 .93 RPM



Species Parental gene accession Homology type Retrogenes number
Canis familiaris ENSCAFG00000002194 ortholog_one2one 2 retrogenes
retro_cfam_1495, retro_cfam_472,
Callithrix jacchus ENSCJAG00000007792 possible_ortholog 1 retrogene
retro_cjac_261,
Dasypus novemcinctus ENSDNOG00000009427 ortholog_one2one 8 retrogenes
retro_dnov_1200, retro_dnov_1527, retro_dnov_195, retro_dnov_1984, retro_dnov_2530, retro_dnov_2532, retro_dnov_585, retro_dnov_755,
Erinaceus europaeus ENSEEUG00000015895 within_species_paralog 1 retrogene
retro_eeur_302,
Echinops telfairi ENSETEG00000001260 ortholog_one2one 10 retrogenes
retro_etel_1194, retro_etel_1752, retro_etel_1839, retro_etel_229, retro_etel_590, retro_etel_704, retro_etel_717, retro_etel_721, retro_etel_838, retro_etel_979,
Felis catus ENSFCAG00000022286 ortholog_one2one 1 retrogene
retro_fcat_1875,
Homo sapiens ENSG00000123975 ortholog_one2one 1 retrogene
retro_hsap_4183,
Mus musculus ENSMUSG00000062248 ortholog_one2one 4 retrogenes
retro_mmus_1356, retro_mmus_1470, retro_mmus_2392, retro_mmus_409,
Ochotona princeps ENSOPRG00000007583 ortholog_one2one 3 retrogenes
retro_opri_111, retro_opri_1122, retro_opri_912,
Pongo abelii ENSPPYG00000025843 ortholog_one2one 1 retrogene
retro_pabe_57,
Pan troglodytes ENSPTRG00000021093 ortholog_one2one 1 retrogene
retro_ptro_2837,
Rattus norvegicus ENSRNOG00000014130 ortholog_one2many 5 retrogenes
retro_rnor_1209, retro_rnor_1909, retro_rnor_2742, retro_rnor_279, retro_rnor_402,
Sorex araneus ENSSARG00000002443 ortholog_one2one 1 retrogene
retro_sara_213,
Ictidomys tridecemlineatus ENSSTOG00000000048 ortholog_one2one 7 retrogenes
retro_itri_1058, retro_itri_1306, retro_itri_1429, retro_itri_1632, retro_itri_269, retro_itri_585, retro_itri_774,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_eeur_183 82.05 98.73
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2. retro_eeur_255 81.01 100.00
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3. retro_eeur_293 81.01 100.00
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4. retro_eeur_551 78.48 100.00
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5. retro_eeur_632 67.09 100.00
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6. retro_eeur_639 77.50 100.00
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7. retro_eeur_640 86.25 100.00
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Download FASTA sequences of all ENSEEUG00000004384 retrocopies