Parental gene:

CKS2, ENSSSCG00000021161

Aliases:None
Description:CDC28 protein kinase regulatory subunit 2 [Source:HGNC Symbol;Acc:2000]
Organism:Pig (Sus scrofa)
Coordinates:14:957428..964655(-)


>ENSSSCG00000021161
ATCCCGTCGCTTCGGTTCAGCGCAGGCTACCCGCCCTCTTGCAGGATGGCCCATAAACAGATCTACTACTCCGACAAATA
CTTTGATGAGCACTACGAGTACCGGCATGTCATGTTACCCAGAGAACTTTCCAAACAAGTACCCAAAACCCATCTGATGT
CTGAAGAGGAGTGGAGGAGACTTGGTGTCCAACAGAGTCTAGGCTGGGTTCATTACATGATTCATGAGCCAGAACCACAC
ATTCTTCTCTTTAGACGACCTCTTCCAAAAGATCAACAAAAATGA

Library Parental gene expression (RPM)
SRP014902_placenta 9 .95 RPM
SRP014902_testis 17 .96 RPM
SRP018288_heart 5 .58 RPM
SRP018288_kidney 18 .91 RPM
SRP018288_liver 15 .51 RPM
SRP018288_lung 6 .31 RPM
SRP018856_adipose 3 .59 RPM
SRP035408_brain 3 .49 RPM
SRP035408_liver 22 .87 RPM



Species Parental gene accession Homology type Retrogenes number
Canis familiaris ENSCAFG00000002194 ortholog_one2one 2 retrogenes
retro_cfam_1495, retro_cfam_472,
Callithrix jacchus ENSCJAG00000007792 ortholog_one2one 1 retrogene
retro_cjac_261,
Echinops telfairi ENSETEG00000001260 ortholog_one2one 10 retrogenes
retro_etel_1194, retro_etel_1752, retro_etel_1839, retro_etel_229, retro_etel_590, retro_etel_704, retro_etel_717, retro_etel_721, retro_etel_838, retro_etel_979,
Felis catus ENSFCAG00000022286 ortholog_one2one 1 retrogene
retro_fcat_1875,
Macaca mulatta ENSMMUG00000012534 ortholog_one2one 1 retrogene
retro_mmul_269,
Mus musculus ENSMUSG00000062248 ortholog_one2one 4 retrogenes
retro_mmus_1356, retro_mmus_1470, retro_mmus_2392, retro_mmus_409,
Nomascus leucogenys ENSNLEG00000008729 ortholog_one2one 1 retrogene
retro_nleu_1793,
Otolemur garnettii ENSOGAG00000028843 ortholog_one2one 1 retrogene
retro_ogar_798,
Pongo abelii ENSPPYG00000025843 possible_ortholog 1 retrogene
retro_pabe_57,
Pteropus vampyrus ENSPVAG00000011011 ortholog_one2one 3 retrogenes
retro_pvam_1297, retro_pvam_1307, retro_pvam_605,
Rattus norvegicus ENSRNOG00000014130 ortholog_one2many 5 retrogenes
retro_rnor_1209, retro_rnor_1909, retro_rnor_2742, retro_rnor_279, retro_rnor_402,
Sus scrofa ENSSSCG00000029737 within_species_paralog 1 retrogene
retro_sscr_730,
Ictidomys tridecemlineatus ENSSTOG00000000048 ortholog_one2one 7 retrogenes
retro_itri_1058, retro_itri_1306, retro_itri_1429, retro_itri_1632, retro_itri_269, retro_itri_585, retro_itri_774,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_sscr_458 82.42 96.81
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2. retro_sscr_675 80.22 96.81
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Download FASTA sequences of all ENSSSCG00000021161 retrocopies