RetrogeneDB ID: | retro_hsap_4183 | ||
Retrocopylocation | Organism: | Human (Homo sapiens) | |
Coordinates: | 9:80834035..80834270(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSG00000234819 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | CKS2 | ||
Ensembl ID: | ENSG00000123975 | ||
Aliases: | CKS2, CKSHS2 | ||
Description: | CDC28 protein kinase regulatory subunit 2 [Source:HGNC Symbol;Acc:2000] |
Percent Identity: | 86.42 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | MAHKQ-IYYSDKYFDEHYEYRHVMLPRELSKQVPKTHLMSEEEWRRL-GVQQSLGWVHYMIHEPEPHILL |
MAHK..IYYSDKYFDEHY.YRHVMLPRELSKQ.P.THLMSEEEWRRL..VQ..LG.VHYMIHEPEPHILL | |
Retrocopy | MAHKP<IYYSDKYFDEHYKYRHVMLPRELSKQAPETHLMSEEEWRRL<YVQWRLGRVHYMIHEPEPHILL |
Parental | FRRPLPKDQQK |
FR.PLPKDQQK | |
Retrocopy | FRGPLPKDQQK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
bodymap2_adipose | 0 .00 RPM | 0 .85 RPM |
bodymap2_adrenal | 0 .00 RPM | 2 .93 RPM |
bodymap2_brain | 0 .00 RPM | 1 .29 RPM |
bodymap2_breast | 0 .00 RPM | 1 .60 RPM |
bodymap2_colon | 0 .00 RPM | 9 .61 RPM |
bodymap2_heart | 0 .00 RPM | 1 .59 RPM |
bodymap2_kidney | 0 .00 RPM | 11 .66 RPM |
bodymap2_liver | 0 .00 RPM | 2 .07 RPM |
bodymap2_lung | 0 .00 RPM | 6 .75 RPM |
bodymap2_lymph_node | 0 .00 RPM | 17 .63 RPM |
bodymap2_ovary | 0 .00 RPM | 2 .97 RPM |
bodymap2_prostate | 0 .00 RPM | 2 .79 RPM |
bodymap2_skeletal_muscle | 0 .00 RPM | 0 .93 RPM |
bodymap2_testis | 0 .04 RPM | 97 .55 RPM |
bodymap2_thyroid | 0 .00 RPM | 3 .48 RPM |
bodymap2_white_blood_cells | 0 .00 RPM | 5 .12 RPM |
Species | RetrogeneDB ID |
---|---|
Pan troglodytes | retro_ptro_2837 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000002194 | 2 retrocopies | |
Callithrix jacchus | ENSCJAG00000007792 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000009427 | 8 retrocopies | |
Erinaceus europaeus | ENSEEUG00000004384 | 7 retrocopies | |
Echinops telfairi | ENSETEG00000001260 | 10 retrocopies | |
Felis catus | ENSFCAG00000022286 | 1 retrocopy | |
Homo sapiens | ENSG00000123975 | 1 retrocopy |
retro_hsap_4183 ,
|
Homo sapiens | ENSG00000173207 | 1 retrocopy | |
Mus musculus | ENSMUSG00000062248 | 4 retrocopies | |
Ochotona princeps | ENSOPRG00000007583 | 3 retrocopies | |
Pongo abelii | ENSPPYG00000025843 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000021093 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000014130 | 5 retrocopies | |
Sorex araneus | ENSSARG00000002443 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000000048 | 7 retrocopies |
Library | Retrogene expression |
---|---|
CEU_NA11831 | 0 .00 RPM |
CEU_NA11843 | 0 .00 RPM |
CEU_NA11930 | 0 .00 RPM |
CEU_NA12004 | 0 .00 RPM |
CEU_NA12400 | 0 .46 RPM |
CEU_NA12751 | 0 .02 RPM |
CEU_NA12760 | 0 .00 RPM |
CEU_NA12827 | 0 .38 RPM |
CEU_NA12872 | 0 .03 RPM |
CEU_NA12873 | 0 .54 RPM |
FIN_HG00183 | 0 .03 RPM |
FIN_HG00277 | 0 .00 RPM |
FIN_HG00315 | 0 .03 RPM |
FIN_HG00321 | 0 .00 RPM |
FIN_HG00328 | 0 .00 RPM |
FIN_HG00338 | 0 .02 RPM |
FIN_HG00349 | 0 .00 RPM |
FIN_HG00375 | 0 .00 RPM |
FIN_HG00377 | 0 .00 RPM |
FIN_HG00378 | 0 .00 RPM |
GBR_HG00099 | 0 .41 RPM |
GBR_HG00111 | 0 .49 RPM |
GBR_HG00114 | 0 .50 RPM |
GBR_HG00119 | 0 .00 RPM |
GBR_HG00131 | 0 .00 RPM |
GBR_HG00133 | 0 .00 RPM |
GBR_HG00134 | 0 .72 RPM |
GBR_HG00137 | 0 .00 RPM |
GBR_HG00142 | 0 .00 RPM |
GBR_HG00143 | 0 .45 RPM |
TSI_NA20512 | 0 .00 RPM |
TSI_NA20513 | 0 .00 RPM |
TSI_NA20518 | 0 .00 RPM |
TSI_NA20532 | 0 .03 RPM |
TSI_NA20538 | 0 .00 RPM |
TSI_NA20756 | 0 .00 RPM |
TSI_NA20765 | 0 .00 RPM |
TSI_NA20771 | 0 .03 RPM |
TSI_NA20786 | 0 .00 RPM |
TSI_NA20798 | 0 .03 RPM |
YRI_NA18870 | 0 .07 RPM |
YRI_NA18907 | 0 .00 RPM |
YRI_NA18916 | 0 .00 RPM |
YRI_NA19093 | 0 .00 RPM |
YRI_NA19099 | 0 .00 RPM |
YRI_NA19114 | 0 .03 RPM |
YRI_NA19118 | 0 .00 RPM |
YRI_NA19213 | 0 .02 RPM |
YRI_NA19214 | 0 .00 RPM |
YRI_NA19223 | 0 .00 RPM |