RetrogeneDB ID: | retro_rnor_2742 | ||
Retrocopylocation | Organism: | Rat (Rattus norvegicus) | |
Coordinates: | 9:79604015..79604238(-) | ||
Located in intron of: | ENSRNOG00000016472 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Cks2 | ||
Ensembl ID: | ENSRNOG00000014130 | ||
Aliases: | Cks2, RGD1562047 | ||
Description: | cyclin-dependent kinases regulatory subunit 2 [Source:RefSeq peptide;Acc:NP_001119555] |
Percent Identity: | 72.73 % |
Parental protein coverage: | 94.94 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | MAHKQIYYSDKYFDEHYEYRHVMLPRELSKQVPKTH-LMSEEEWRRLGVQQS-LGWVHYMIHEPEPHILL |
MAHKQIYY..KY.D.HY...HV.LPR..SKQVPKTH..M.EEEWRRL.VQQS.LG.VH..IHEPEP..LL | |
Retrocopy | MAHKQIYYTNKYLDKHYKCCHVTLPRAFSKQVPKTH<SMPEEEWRRLSVQQS<LGRVHDRIHEPEPRSLL |
Parental | FRRPLPK |
FR.PLPK | |
Retrocopy | FR*PLPK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 1 .01 RPM |
SRP017611_kidney | 0 .00 RPM | 2 .37 RPM |
SRP017611_liver | 0 .00 RPM | 2 .69 RPM |