RetrogeneDB ID: | retro_itri_1366 | ||
Retrocopylocation | Organism: | Squirrel (Ictidomys tridecemlineatus) | |
Coordinates: | JH393459.1:1899652..1900168(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSSTOG00000023908 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 93.75 % |
Parental protein coverage: | 88. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | MAKGDPKKPKGKMSAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKFDEMAKADKVR |
MAKGDPKKPKGKMSAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKFDEM.KADKVR | |
Retrocopy | MAKGDPKKPKGKMSAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKFDEMTKADKVR |
Parental | YDREMKDYGPAKGGKKKKDPNAPKRPPSGFFLFCSEFRPKIKSTNPGISIGDVAKKLGEMWNNLSDSEKQ |
YDREMKDYGPAKGGKKKKDPNAPKRPPSG.FLFCSEFRPKI.STNP.ISIGDVAKKLGEMWNNLSDSEKQ | |
Retrocopy | YDREMKDYGPAKGGKKKKDPNAPKRPPSG-FLFCSEFRPKINSTNPDISIGDVAKKLGEMWNNLSDSEKQ |
Parental | PYITKAAKLKEKYEKDVADYKSKGKFDGTKGPAKVA |
PYITK.AKLKEK...D...YKSKGKFDGTKGPAKVA | |
Retrocopy | PYITKTAKLKEK*FAD---YKSKGKFDGTKGPAKVA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |