Parental gene:

ENSSTOG00000023908

Aliases:None
Description:None
Organism:Squirrel (Ictidomys tridecemlineatus)
Coordinates:JH393524.1:1523032..1524999(-)


>ENSSTOG00000023908
ATGGCTAAAGGTGATCCCAAGAAACCAAAGGGCAAGATGTCTGCTTATGCCTTCTTTGTGCAGACTTGCAGAGAAGAACA
TAAGAAGAAAAATCCAGAAGTCCCTGTCAATTTTGCAGAATTTTCCAAGAAGTGCTCTGAGAGGTGGAAGACAATGTCTG
GGAAAGAGAAATCTAAATTTGATGAAATGGCAAAGGCAGATAAAGTACGCTATGATCGGGAAATGAAGGACTATGGACCA
GCTAAGGGAGGCAAGAAGAAAAAGGATCCTAATGCCCCCAAAAGACCACCGTCTGGATTCTTCTTGTTCTGTTCAGAATT
CCGCCCCAAGATCAAGTCCACAAATCCTGGTATCTCCATTGGAGATGTGGCAAAAAAGCTGGGTGAGATGTGGAATAACT
TAAGTGACAGTGAAAAGCAGCCATACATCACGAAGGCTGCAAAGCTGAAGGAGAAATATGAGAAGGATGTTGCTGACTAT
AAGTCTAAAGGAAAGTTTGATGGCACAAAGGGTCCTGCTAAAGTTGCCCGGAAAAAAGTGGAAGAGGAAGACGAAGAAGA
GGAGGAGGAAGAAGAGGAGGAGGAGGAGGAGGAGGATGAATAA

Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000005150 ortholog_many2many 2 retrogenes
Canis familiaris ENSCAFG00000028715 possible_ortholog 1 retrogene
Choloepus hoffmanni ENSCHOG00000005005 ortholog_one2many 2 retrogenes
Callithrix jacchus ENSCJAG00000003936 ortholog_many2many 9 retrogenes
Dipodomys ordii ENSDORG00000010826 ortholog_one2many 4 retrogenes
Equus caballus ENSECAG00000020596 possible_ortholog 1 retrogene
Echinops telfairi ENSETEG00000015689 possible_ortholog 4 retrogenes
Felis catus ENSFCAG00000024624 possible_ortholog 4 retrogenes
Homo sapiens ENSG00000029993 ortholog_one2many 8 retrogenes
Gorilla gorilla ENSGGOG00000027164 ortholog_one2many 16 retrogenes
Loxodonta africana ENSLAFG00000025877 possible_ortholog 1 retrogene
Myotis lucifugus ENSMLUG00000010926 possible_ortholog 4 retrogenes
Macaca mulatta ENSMMUG00000004633 ortholog_one2many 20 retrogenes
Monodelphis domestica ENSMODG00000005735 ortholog_one2many 7 retrogenes
Mustela putorius furo ENSMPUG00000011606 ortholog_many2many 2 retrogenes
Mus musculus ENSMUSG00000015217 ortholog_many2many 1 retrogene
Oryctolagus cuniculus ENSOCUG00000005986 possible_ortholog 7 retrogenes
Otolemur garnettii ENSOGAG00000001773 ortholog_many2many 19 retrogenes
Procavia capensis ENSPCAG00000001945 possible_ortholog 1 retrogene
Pongo abelii ENSPPYG00000020818 ortholog_one2many 22 retrogenes
Pan troglodytes ENSPTRG00000022371 ortholog_one2many 22 retrogenes
Pteropus vampyrus ENSPVAG00000000219 ortholog_one2many 1 retrogene
Rattus norvegicus ENSRNOG00000011096 ortholog_many2many 4 retrogenes
Rattus norvegicus ENSRNOG00000050910 ortholog_many2many 5 retrogenes
Sarcophilus harrisii ENSSHAG00000002916 ortholog_one2many 2 retrogenes
Sus scrofa ENSSSCG00000012745 ortholog_many2many 3 retrogenes
Ictidomys tridecemlineatus ENSSTOG00000000443 other_paralog 19 retrogenes
Ictidomys tridecemlineatus ENSSTOG00000023980 within_species_paralog 2 retrogenes
Tupaia belangeri ENSTBEG00000003068 ortholog_one2many 18 retrogenes
Tursiops truncatus ENSTTRG00000000205 ortholog_one2many 2 retrogenes
Vicugna pacos ENSVPAG00000000096 ortholog_one2many 2 retrogenes

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_itri_777 72.22 89.00
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2. retro_itri_909 91.67 71.00
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3. retro_itri_1366 93.75 88.00
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4. retro_itri_1527 52.63 65.50
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5. retro_itri_1655 84.08 78.50
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6. retro_itri_1749 64.67 88.00
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Download FASTA sequences of all ENSSTOG00000023908 retrocopies