RetrogeneDB ID: | retro_itri_1214 | ||
Retrocopylocation | Organism: | Squirrel (Ictidomys tridecemlineatus) | |
Coordinates: | JH393403.1:5092973..5093564(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | YWHAB | ||
Ensembl ID: | ENSSTOG00000003733 | ||
Aliases: | None | ||
Description: | tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide [Source:HGNC Symbol;Acc:12849] |
Percent Identity: | 66.34 % |
Parental protein coverage: | 82.11 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 3 |
Parental | LLSVAYKNVVGARRSS-WRVISSIEQKTERNEKKQQMGKEYREKIEAELQDICNDVLELLDKYLIPNATQ |
..SVA.KNVVGA.RSS........E.KTE.NEK.QQM.KE..EKIE..LQD.C.DV.ELLDKYLIPNA.Q | |
Retrocopy | ICSVASKNVVGA-RSS<FLAFFNREPKTESNEK-QQMSKEDLEKIEESLQDVCSDVPELLDKYLIPNAAQ |
Parental | PESKVFYLKMKGDYFRYL-SEVASGDNKQTTVSNSQQAYQEAFEISKKEMQPTHPIRLGLALNFSVFYYE |
P.S....LKMK.DYF....SEV.SGD.KQT....SQQAY.E...I..KE.QP.HP..LGL.L.FSVF.YE | |
Retrocopy | PGSTMI-LKMK-DYFGVF<SEVTSGDDKQTPAVHSQQAY*EPNKITEKETQPSHPVGLGLPLYFSVFDYE |
Parental | ILNSPEKACSLAK-TAFDEAIAELDTLNEESYKDSTLIMQLLRDNLTLWTSENQGDEGDAGEGEN |
I.N.PEKACSLAK.TAFD...AELD..NEESYKDSTLI..LLRD.LT.WT.E.QGDEG.AGEGE. | |
Retrocopy | IFNPPEKACSLAK<TAFDKIFAELDRANEESYKDSTLIL*LLRDDLTVWTLESQGDEGNAGEGED |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |