RetrogeneDB ID: | retro_chof_2221 | ||
Retrocopylocation | Organism: | Sloth (Choloepus hoffmanni) | |
Coordinates: | scaffold_59332:6217..6812(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | YWHAB | ||
Ensembl ID: | ENSCHOG00000005782 | ||
Aliases: | None | ||
Description: | tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide [Source:HGNC Symbol;Acc:12849] |
Percent Identity: | 76.12 % |
Parental protein coverage: | 80.89 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | SVSYKNVVGARRSSWRVISSIEQKTERNEKKQQMGKEYREKIEAELQDICNDVLELLDKYLIPNATQPES |
SV.Y.NVVGAR.SSWRVIS.IE.KT.RNEK.QQM.K.Y.EK.EAELQ.ICND.L.LLDKYLIPNA.QPES | |
Retrocopy | SVTYRNVVGARHSSWRVISNIELKTKRNEKQQQMAKGYQEKLEAELQGICNDMLGLLDKYLIPNAAQPES |
Parental | KVFYLKMKGDYFR-YLSEVASGDSKQTTVSNSQQAYQEAFEISKKEMQPTHPIRLGLALNFSVFYYEI-L |
KVFYLKMKGD..R..L.EVASGDSKQT.V.NSQQAYQEAFEISKKEMQP.HPI..GLALNFSV.YYEI.L | |
Retrocopy | KVFYLKMKGDDLR<ILFEVASGDSKQTSVPNSQQAYQEAFEISKKEMQPIHPI*PGLALNFSVVYYEI<L |
Parental | NSPEKACSLAKTAFDEAIAELDTLNEESYKDSTLIMQLLRDNLTXXTSETQGDEREAGGGR |
NSP.KAC.LAK.AF.E.IAELDTLN.ES..DSTLI.QL..D.LT..TSE.QG....AG.G. | |
Retrocopy | NSPKKACTLAKMAFNEVIAELDTLNAESCNDSTLIVQLIWDSLTLWTSENQGIKGDAGEGK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |