RetrogeneDB ID: | retro_ocun_273 | ||
Retrocopylocation | Organism: | Rabbit (Oryctolagus cuniculus) | |
Coordinates: | 1:11450437..11450832(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | YWHAB | ||
Ensembl ID: | ENSOCUG00000003002 | ||
Aliases: | None | ||
Description: | tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide [Source:HGNC Symbol;Acc:12849] |
Percent Identity: | 62.14 % |
Parental protein coverage: | 55.28 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 4 |
Parental | EKIEAELQDICNDVLELLDKYLIPNATQPE-SKVFYLKMKGDYFRYL-SEVASGDNKQTTVSNSQQAYQE |
EKIE.ELQDIC..VL.LLDKYLIP.A.QPE..KVFYLK.K.DYF.YL...........T.....Q.AYQ. | |
Retrocopy | EKIEVELQDICKVVL*LLDKYLIPKAIQPE<NKVFYLKVK-DYFWYL<KVAYGDNKRTTVLNSQQ-AYQD |
Parental | AFEISKKEMQPTHPIRLGLALNFSVFYYEILNSPEKACSL-AKTAFDEA-IAELDTLNEESYKDSTLIMQ |
.FEISKK..QPTHPI.LGLA.NFSV.YYEILNSP.K.CSL...TA.D....AELDT.N.E....ST..MQ | |
Retrocopy | VFEISKKQIQPTHPIPLGLAHNFSVLYYEILNSPGKVCSL<GYTASDDE<VAELDTMNQE-*EESTQMMQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .11 RPM | 218 .49 RPM |
SRP017611_kidney | 0 .30 RPM | 132 .37 RPM |
SRP017611_liver | 0 .00 RPM | 63 .28 RPM |