RetrogeneDB ID: | retro_chof_971 | ||
Retrocopylocation | Organism: | Sloth (Choloepus hoffmanni) | |
Coordinates: | scaffold_177572:264..999(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | YWHAB | ||
Ensembl ID: | ENSCHOG00000005782 | ||
Aliases: | None | ||
Description: | tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide [Source:HGNC Symbol;Acc:12849] |
Percent Identity: | 85.94 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 3 |
Parental | MTMDK-SELVQKAKLA-EQAERYDDMAAAMKAVTEQGHELSNKERNLLSVSYKNVVGARRSSWRVISSIE |
M.MDK..ELVQKAKLA..QAE..DDMAAAMKAV.EQ.HELSN.ERNLLSV.YKNVVGARRSS.RVIS.IE | |
Retrocopy | MAMDK<NELVQKAKLA<LQAEL*DDMAAAMKAVMEQRHELSNEERNLLSVAYKNVVGARRSS*RVISIIE |
Parental | QKTERNEKKQQMGKEYREKIEAELQDICNDVLELLDKYLIPNATQPESKVFYLKMKGDYFRYLSEVASGD |
.KTERNEKKQQMG.EYREK.EAELQDICNDVLEL.DKYLIP.ATQPESK.FYLKM.GDY.RYLSEVASGD | |
Retrocopy | RKTERNEKKQQMGEEYREKMEAELQDICNDVLELWDKYLIPSATQPESKGFYLKMTGDYLRYLSEVASGD |
Parental | SKQTTVSNSQQAYQEAFEISKKEMQPTHPIRLGLALNFSVFYYEILNSPEKACSLAKTAFDEAIAELDTL |
SKQTT.SNSQQAY.EAFEISKKEMQPTHPIRLGLALNFSVFYYEILNSPEKACSLAKTAFD.AIAE.DTL | |
Retrocopy | SKQTTMSNSQQAY*EAFEISKKEMQPTHPIRLGLALNFSVFYYEILNSPEKACSLAKTAFDKAIAEFDTL |
Parental | NEESYKDSTLIMQLLRDNLTXXTSETQGDEREAG-GGRD |
N.ES.KD.TLIMQLLRDNLT..T.E.QGDE.EAG.GGR. | |
Retrocopy | NVESHKDGTLIMQLLRDNLTLWTLENQGDE*EAG<GGRE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |