RetrogeneDB ID: | retro_itri_342 | ||
Retrocopylocation | Organism: | Squirrel (Ictidomys tridecemlineatus) | |
Coordinates: | JH393285.1:7872809..7873439(+) | ||
Located in intron of: | ENSSTOG00000011536 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | CAPNS1 | ||
Ensembl ID: | ENSSTOG00000026235 | ||
Aliases: | None | ||
Description: | calpain, small subunit 1 [Source:HGNC Symbol;Acc:1481] |
Percent Identity: | 69.52 % |
Parental protein coverage: | 78.79 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | ILGGVISAISEAAA-QYNPEPPPP-RTHYSNIEANESEEVRQFRKLFAQLAGDDMEVSATELMNILNKIV |
I.GG....ISEAAA.QY.PEPPPP...H....EA.ESEEVR.FR..FAQLAG.DMEV.AT.LMNILNK.. | |
Retrocopy | IVGGLVNLISEAAAAQYTPEPPPPTQQHFTTVEASESEEVRRFRHQFAQLAGPDMEVGATDLMNILNKVL |
Parental | TRHPDLKTDGFGIDTCRSMVAVMDSDTTGKLGFEEFKYLWNNIKKWQAIYKQFDFDRSGTICSSELPGAF |
..H..L.T..F..DTCRS.V.VMDSDTTGKLGFEEFKYLWNNIKKWQ..Y.Q...D.SG...SS.L..A. | |
Retrocopy | AKHKYLNTARFSLDTCRSIVSVMDSDTTGKLGFEEFKYLWNNIKKWQCVYLQYVRDGSGSLGSSQLREAL |
Parental | EAAGFRLNDHLYNMIIRRYSDEEGNMDFDNFISCLVRLDAMFRAFKSLDRDGTGQIQVNIQEWLQLTMYS |
.AAGF.LN..LY.MI.RRY.DE...MDF..FISCLVRLDAMFRAFKSLDRD..G.IQV.IQEWLQLTMYS | |
Retrocopy | QAAGFQLNEQLYQMILRRYVDEDRGMDFNDFISCLVRLDAMFRAFKSLDRDADGLIQVSIQEWLQLTMYS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |