RetrogeneDB ID: | retro_itri_842 | ||
Retrocopylocation | Organism: | Squirrel (Ictidomys tridecemlineatus) | |
Coordinates: | JH393332.1:8348954..8349549(+) | ||
Located in intron of: | ENSSTOG00000026416 | ||
Retrocopyinformation | Ensembl ID: | ENSSTOG00000023745 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PRDX2 | ||
Ensembl ID: | ENSSTOG00000025862 | ||
Aliases: | None | ||
Description: | Peroxiredoxin 2 [Source:UniProtKB/TrEMBL;Acc:Q3HRI1] |
Percent Identity: | 95.98 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | MASGNAHIGKPAPDFTATAVVDGAFKEVKLSDYRGKYVVLFFYPLDFTFVCPTEIIAFSEHAEDFRKLGC |
MASGNAHIGKPAPDFTATAVVDGAFKEVKLSD.RGKYVVLFFYPLDFTFVCP.EI.AFSEHAEDF.KLGC | |
Retrocopy | MASGNAHIGKPAPDFTATAVVDGAFKEVKLSDSRGKYVVLFFYPLDFTFVCPMEIMAFSEHAEDFHKLGC |
Parental | EVLGVSVDSQFTHLAWINTPRKEGGLGPLNIPLLADVTRSLSHNYGVLKSDEGIAY-RGLFIIDGKGVLR |
EVLGVSVDSQFTHL.WINTPRKEGGLGPLNIPLLADVTRSLSHNYGVLK.DEGIAY.RGLFIIDGKGVLR | |
Retrocopy | EVLGVSVDSQFTHLSWINTPRKEGGLGPLNIPLLADVTRSLSHNYGVLKRDEGIAY>RGLFIIDGKGVLR |
Parental | QITVNDLPVGRSVDEALRLVQAFQYTDEHGEVCPAGWKPGSDTIKPNVDDSKEYFSKHN |
QITVNDLPVGRSVDEAL.LVQAFQYTDEHGEVCPAGWKPGSDTIKPNVDDSKEYFSKHN | |
Retrocopy | QITVNDLPVGRSVDEALWLVQAFQYTDEHGEVCPAGWKPGSDTIKPNVDDSKEYFSKHN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |