RetrogeneDB ID: | retro_mmul_2061 | ||
Retrocopylocation | Organism: | Rhesus macaque (Macaca mulatta) | |
Coordinates: | 6:176196913..176197452(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MMU.2032 | ||
Ensembl ID: | ENSMMUG00000005689 | ||
Aliases: | None | ||
Description: | peroxiredoxin-2 [Source:RefSeq peptide;Acc:NP_001248186] |
Percent Identity: | 65.96 % |
Parental protein coverage: | 91.92 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 6 |
Parental | MASGNARIGKPAPDFKATAVVDGAFKEVKL-SDYKGKYVVLFFYPLDFTFVCPTEIIAFSNRAED-FRKL |
MASG....G.PAPDFKATA.VDGAF.EVKL...Y.GKYVVLF.YPLDFTF..PTE.IAFS..AED.F... | |
Retrocopy | MASGQSQLGEPAPDFKATALVDGAFQEVKL<VGYEGKYVVLFLYPLDFTFLWPTENIAFSDLAED<FPQA |
Parental | GCEVLG-VSVDSQFTHLAWINTPRKEGGLG-PLNIPLLADVTRRLSEDYGVLKTDE-GIAYRG-LFIIDG |
G....G.VS....FTHL.WIN.P.K.G.LG.P...P..AD....LSEDYGVLKT.E.G..Y...LFIIDG | |
Retrocopy | GLRSAG<VSRWTEFTHLSWINSPQK*GALG>PTHLPP-ADMMGSLSEDYGVLKTHE<GCSYPA<LFIIDG |
Parental | KGVLRQITVNDLPVGRSVDEALRLVQAFQYTDEHGEVCPAGWKPGSDT |
KG.L.QIT..DLPVGRS.DEALR.VQAFQY..EHGEVCP.GWKPG... | |
Retrocopy | KGDLCQITATDLPVGRSMDEALRRVQAFQYVIEHGEVCPTGWKPGGNS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .22 RPM | 83 .37 RPM |
SRP007412_brain_prefrontal_cortex | 0 .40 RPM | 172 .54 RPM |
SRP007412_cerebellum | 0 .71 RPM | 75 .68 RPM |
SRP007412_heart | 0 .41 RPM | 69 .84 RPM |
SRP007412_kidney | 0 .23 RPM | 84 .97 RPM |
SRP007412_liver | 0 .28 RPM | 76 .71 RPM |
SRP007412_testis | 0 .19 RPM | 2 .07 RPM |