Parental gene:

PRDX2, ENSCAFG00000017163

Aliases:None
Description:peroxiredoxin 2 [Source:HGNC Symbol;Acc:9353]
Organism:Dog (Canis familiaris)
Coordinates:20:49352595..49357105(+)


>ENSCAFG00000017163
ATGACCTCTGGCAAGGCGCACATCGGAAAGCCCGCCCCGCCCTTCCAGGCCACCGCCGTGGTGGATGGCGCCTTCAAGGA
GGTGAAGCTTTGCGACTACAAAGGGAAATACTTGGTCCTCTTTTTCTACCCGCTGGACTTCACCTTCGTCTGCCCCACGG
AGATCATCGCCTTCAGCGAGCATGCCGAGGACTTCCGCAAGCTGGGCTGTGAGGTCCTGGGGGTCTCCGTGGACTCTCAG
TTCACCCACCTGGCTTGGATCAACACTCCCAGGAAGGAAGGAGGGTTGGGCCCCCTGAACATCCCCCTGGTGGCTGATGT
AACCAGAAGTTTATCTGAAGATTATGGTGTGCTGAAGGAAGATGAAGGCATTGCCTACAGGGGCCTCTTTATCATCGATG
GCAAGGGTGTCCTTCGCCAGATCACTGTCAATGATTTGCCTGTGGGGCGCTCCGTGGATGAAGTTCTGCGGCTGGTTCAG
GCCTTCCAGTACACGGATGAGCACGGGGAAGTATGCCCTGCTGGCTGGAAGCCAGGCAGTGACACAATCAAGCCTAACGT
GGACGACAGCAAGGAATACTTCTCCAAACACAACTAG

Library Parental gene expression (RPM)
SRP017611_brain 142 .75 RPM
SRP017611_kidney 112 .26 RPM
SRP017611_liver 5 .08 RPM
SRP012049_cerebellum 312 .47 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000012307 ortholog_one2one 3 retrogenes
retro_amel_1188, retro_amel_1710, retro_amel_55,
Canis familiaris ENSCAFG00000004567 within_species_paralog 5 retrogenes
retro_cfam_1313, retro_cfam_270, retro_cfam_577, retro_cfam_834, retro_cfam_988,
Canis familiaris ENSCAFG00000012109 within_species_paralog 3 retrogenes
retro_cfam_1322, retro_cfam_219, retro_cfam_9,
Ciona intestinalis ENSCING00000003002 ortholog_one2many 1 retrogene
retro_cint_8,
Callithrix jacchus ENSCJAG00000004882 ortholog_one2one 4 retrogenes
retro_cjac_1269, retro_cjac_1795, retro_cjac_2356, retro_cjac_2392,
Dipodomys ordii ENSDORG00000009005 ortholog_one2one 1 retrogene
retro_dord_176,
Felis catus ENSFCAG00000000473 ortholog_one2one 1 retrogene
retro_fcat_1755,
Homo sapiens ENSG00000167815 ortholog_one2one 3 retrogenes
retro_hsap_1184, retro_hsap_3278, retro_hsap_3500,
Gorilla gorilla ENSGGOG00000025089 ortholog_one2many 3 retrogenes
retro_ggor_2366, retro_ggor_2833, retro_ggor_923,
Macaca mulatta ENSMMUG00000005689 ortholog_one2many 2 retrogenes
retro_mmul_1780, retro_mmul_2061,
Monodelphis domestica ENSMODG00000006978 ortholog_one2one 1 retrogene
retro_mdom_1770,
Mustela putorius furo ENSMPUG00000004591 ortholog_one2one 2 retrogenes
retro_mputfur_28, retro_mputfur_660,
Mus musculus ENSMUSG00000005161 ortholog_one2many 2 retrogenes
retro_mmus_2403, retro_mmus_472,
Nomascus leucogenys ENSNLEG00000012800 ortholog_one2one 2 retrogenes
retro_nleu_2110, retro_nleu_2883,
Otolemur garnettii ENSOGAG00000024998 ortholog_one2many 2 retrogenes
retro_ogar_1993, retro_ogar_244,
Pongo abelii ENSPPYG00000009607 ortholog_one2one 3 retrogenes
retro_pabe_2711, retro_pabe_2892, retro_pabe_988,
Pan troglodytes ENSPTRG00000010541 ortholog_one2one 3 retrogenes
retro_ptro_2217, retro_ptro_2372, retro_ptro_812,
Rattus norvegicus ENSRNOG00000003520 ortholog_one2one 2 retrogenes
retro_rnor_2288, retro_rnor_497,
Sorex araneus ENSSARG00000000146 ortholog_one2one 1 retrogene
retro_sara_96,
Sarcophilus harrisii ENSSHAG00000015596 ortholog_one2one 1 retrogene
retro_shar_305,
Sus scrofa ENSSSCG00000013736 ortholog_one2one 2 retrogenes
retro_sscr_155, retro_sscr_962,
Ictidomys tridecemlineatus ENSSTOG00000025862 ortholog_one2one 1 retrogene
retro_itri_842,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cfam_1603 69.10 87.88
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2. retro_cfam_1624 58.86 86.36
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3. retro_cfam_1739 81.77 100.00
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Download FASTA sequences of all ENSCAFG00000017163 retrocopies