RetrogeneDB ID: | retro_cfam_1603 | ||
Retrocopylocation | Organism: | Dog (Canis familiaris) | |
Coordinates: | 36:24913969..24914493(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PRDX2 | ||
Ensembl ID: | ENSCAFG00000017163 | ||
Aliases: | None | ||
Description: | peroxiredoxin 2 [Source:HGNC Symbol;Acc:9353] |
Percent Identity: | 69.1 % |
Parental protein coverage: | 87.88 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 3 |
Parental | GAFKEVKLCDYKGKYLVLFFYPLDFTFVCPTEIIAFSE-HAEDFRKLGCEVLGVSVDSQFTHLAWINT-P |
G.FK...L.DYKGK..V.FFYPLDFTF.CPTEIIAFSE..AE.F.KL.C.V.G.SV.S.F.HLAWINT.P | |
Retrocopy | GQFKDLSLSDYKGKCVVFFFYPLDFTFACPTEIIAFSE<RAEEFKKLNCQVIGASVGSHFCHLAWINT>P |
Parental | RKEGGLGPLN-IPLVADVTRSLSEDYGVLKEDEGIAYRGLFIIDGKGVLRQITVNDLPVG-RSVDEVLRL |
R......P...IPLV.D..R....DYGVLK.DEGI..RGLFIID.KG.LRQ.TVND.PV..R.VDE.LRL | |
Retrocopy | RNKEDWDP*TFIPLVSDPRRTVAQDYGVLKADEGIWFRGLFIIDDKGILRQTTVNDPPVV<RPVDETLRL |
Parental | VQAFQYTDEHGEVCPAGWKPGSDTIKPNVDDSKEYFSK |
VQAFQ.TD.HGE.CPAGWKPGSD.IKP.V..SKEYFSK | |
Retrocopy | VQAFQFTDKHGEMCPAGWKPGSDPIKPDVQKSKEYFSK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012049_cerebellum | 0 .00 RPM | 312 .47 RPM |
SRP017611_brain | 0 .00 RPM | 142 .75 RPM |
SRP017611_kidney | 0 .07 RPM | 112 .26 RPM |
SRP017611_liver | 0 .00 RPM | 5 .08 RPM |