RetrogeneDB ID: | retro_sscr_962 | ||
Retrocopylocation | Organism: | Pig (Sus scrofa) | |
Coordinates: | 8:42848187..42848651(+) | ||
Located in intron of: | ENSSSCG00000008839 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PRDX2 | ||
Ensembl ID: | ENSSSCG00000013736 | ||
Aliases: | None | ||
Description: | peroxiredoxin 2 [Source:HGNC Symbol;Acc:9353] |
Percent Identity: | 80.89 % |
Parental protein coverage: | 78.79 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | SGNAHIGKPAPEFQATAVVNGAFKEVKLSDYKG-KYLVLFFYPLDFTFVCPTEIIAFSDRAEEFHQLGCE |
SGN.HIGKP..EFQATAV.NGAFKE.KLSD.KG..YLVLF.YPLDF.FVCPT.I..F...AEEFH.LGCE | |
Retrocopy | SGNQHIGKPTLEFQATAVGNGAFKEEKLSDSKG<EYLVLFSYPLDFIFVCPTHI-TFRN*AEEFHNLGCE |
Parental | VLGVSVDSQFTHLAWINTPRKEGGLGPLKIPLLADVTRNLSLDYGVLKEDEGIAYRGLFIIDGKGVLRQI |
VLGVSVDSQFTHL.WINTPRKEGGLGPL.IPLLADVTRNLS.D.GV.K.DE.IAYRGLFII..KGVL.QI | |
Retrocopy | VLGVSVDSQFTHLPWINTPRKEGGLGPLNIPLLADVTRNLSPDHGVPKDDEDIAYRGLFIIHRKGVLCQI |
Parental | TVNDLPVGRSVDEALRL |
.VNDLPVG.SVDEAL.L | |
Retrocopy | MVNDLPVGHSVDEALKL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP014902_placenta | 0 .13 RPM | 186 .22 RPM |
SRP014902_testis | 0 .28 RPM | 208 .49 RPM |
SRP018288_heart | 0 .03 RPM | 133 .90 RPM |
SRP018288_kidney | 0 .10 RPM | 261 .73 RPM |
SRP018288_liver | 0 .00 RPM | 74 .04 RPM |
SRP018288_lung | 0 .00 RPM | 98 .98 RPM |
SRP018856_adipose | 0 .34 RPM | 203 .91 RPM |
SRP035408_brain | 0 .00 RPM | 243 .70 RPM |
SRP035408_liver | 0 .00 RPM | 84 .31 RPM |