RetrogeneDB ID: | retro_sscr_155 | ||
Retrocopylocation | Organism: | Pig (Sus scrofa) | |
Coordinates: | 1:57530576..57531124(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSSSCG00000004278 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PRDX2 | ||
Ensembl ID: | ENSSSCG00000013736 | ||
Aliases: | None | ||
Description: | peroxiredoxin 2 [Source:HGNC Symbol;Acc:9353] |
Percent Identity: | 67.39 % |
Parental protein coverage: | 92.42 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | FQATAVVNGAFKEVKLSDYKGKYLVLFFYPLDFTFVCPTEIIAFSDRAEEFHQLGCEVLGVSVDSQFTHL |
.....VV.G.FKEV..SDYK.KYLVLFFY.L.FTFV.PTEI.AF...AEEFH.L...VLGVSV.SQFTHL | |
Retrocopy | WNSSGVVDGSFKEVTFSDYKMKYLVLFFYLLNFTFVFPTEITAFRNYAEEFHKLSYKVLGVSVNSQFTHL |
Parental | AWINTPRKEGGL-GPLKIPLLADVTRNLSLDYGVLKEDEGIAYRGLFIIDGKGVLRQITVNDLPVGRSVD |
AWINT...E.GL.GP...PLLA.VTR.LS.DY.VLKEDE.I.Y.GL.II.GK.VL.QIT..D..V..S.D | |
Retrocopy | AWINTTLQEKGL<GPMNFPLLASVTRSLSHDYDVLKEDESITYGGLLIINGKSVLCQITIKDSIVRCSID |
Parental | EALRLVQAFQYTDEHGEVCPAGWKPGSDTIKPNVDDSKEYFSKH |
EAL.L.Q.FQYTDEH.EVCP...KPGSDTIKP.VD.SKEY...H | |
Retrocopy | EALWLGQTFQYTDEHREVCPSDQKPGSDTIKPKVDNSKEYLPQH |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP014902_placenta | 0 .00 RPM | 186 .22 RPM |
SRP014902_testis | 0 .00 RPM | 208 .49 RPM |
SRP018288_heart | 0 .00 RPM | 133 .90 RPM |
SRP018288_kidney | 0 .00 RPM | 261 .73 RPM |
SRP018288_liver | 0 .00 RPM | 74 .04 RPM |
SRP018288_lung | 0 .00 RPM | 98 .98 RPM |
SRP018856_adipose | 0 .00 RPM | 203 .91 RPM |
SRP035408_brain | 0 .00 RPM | 243 .70 RPM |
SRP035408_liver | 0 .00 RPM | 84 .31 RPM |