RetrogeneDB ID: | retro_shar_305 | ||
Retrocopylocation | Organism: | Tasmanian devil (Sarcophilus harrisii) | |
Coordinates: | GL841283.1:399671..400247(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PRDX2 | ||
Ensembl ID: | ENSSHAG00000015596 | ||
Aliases: | None | ||
Description: | peroxiredoxin 2 [Source:HGNC Symbol;Acc:9353] |
Percent Identity: | 56.25 % |
Parental protein coverage: | 94.97 % |
Number of stop codons detected: | 5 |
Number of frameshifts detected | 0 |
Parental | IGKPAPDFHATAVV-DGAFKEVKLSDYKGKYLVIFFYPLDFTFVCPTEIIAFSDRASDFQKLGCEVLGVS |
IG.PAP...A..V..D..FK....SDY..K.....FY.LDFTFVC...IIAFSD....F.KL.C...G.S | |
Retrocopy | IGFPAPNSKAISVMSDWQFKDISISDYREKHDALLFYSLDFTFVCSIGIIAFSD*TQEFKKLNCQGIGAS |
Parental | VDSQFTHLAWINTPRKEGGLGPLKIPLLADVTRNLARDYGV--LKEDEGIAYRGLFIIDAKGLVRQITVN |
VDS.F.HL.W.NT..K.G.LG...IP.L.......A.DYG...LK..E....R.LFII..KG..R.IT.N | |
Retrocopy | VDSYFRHLTWVNTVKKNGSLGVVNIPFLSGQK*TIA*DYGPISLKANERVSFRDLFIIADKGILR*ITIN |
Parental | DLPVGRSVDEALRLVQAFQFTDEHGEVCPAGWRPGGDTIKPNVEDSKEYFSK |
D.PVGRSVDE.L.LVQ.FQFTD.H.EV.PAGW..G..TIKP.V.DSKEYFSK | |
Retrocopy | DIPVGRSVDEML*LVQSFQFTDKHREVFPAGWKLGSETIKPEVQDSKEYFSK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |