Parental gene: | PRDX2, ENSPTRG00000010541 |
| Aliases: | None |
| Description: | None |
| Organism: | Chimpanzee (Pan troglodytes) |
| Coordinates: | 19:13066866..13071688(-) |
>ENSPTRG00000010541
ATGGCCTCCGGTAACGCGCGCATCGGAAAGCCAGCCCCTGACTTCAAGGCCACAGCGGTGGTTGATGGCGCCTTCAAAGA
GGTGAAGCTGTCGGACTACAAAGGGAAGTACGTGGTCCTCTTTTTCTACCCTCTGGACTTCACTTTTGTGTGCCCCACCG
AGATCATCGCGTTCAGCAACCGTGCCGAGGACTTCCGCAAGCTGGGCTGTGAAGTGCTGGGCGTCTCGGTGGACTCTCAG
TTCACCCACCTGGCTTGGATCAACACCCCCCGGAAAGAGGGAGGCTTGGGCCCCCTGAACATCCCCCTGCTTGCTGACGT
GACCAGACGCTTGTCTGAGGATTACGGCGTGCTGAAAACAGATGAGGGCATTGCCTACAGGGGCCTCTTTATCATCGATG
GCAAGGGTGTCCTTCGCCAGATCACTGTTAATGATTTGCCTGTGGGACGCTCCGTGGATGAGGCTCTGCGGCTGGTCCAG
GCCTTCCAGTACACAGACGAGCATGGGGAAGTTTGTCCCGCTGGCTGGAAGCCTGGCAGTGACACGATTAAGCCCAACGT
GGATGACAGCAAGGAATATTTCTCCAAACACAATTAG
ATGGCCTCCGGTAACGCGCGCATCGGAAAGCCAGCCCCTGACTTCAAGGCCACAGCGGTGGTTGATGGCGCCTTCAAAGA
GGTGAAGCTGTCGGACTACAAAGGGAAGTACGTGGTCCTCTTTTTCTACCCTCTGGACTTCACTTTTGTGTGCCCCACCG
AGATCATCGCGTTCAGCAACCGTGCCGAGGACTTCCGCAAGCTGGGCTGTGAAGTGCTGGGCGTCTCGGTGGACTCTCAG
TTCACCCACCTGGCTTGGATCAACACCCCCCGGAAAGAGGGAGGCTTGGGCCCCCTGAACATCCCCCTGCTTGCTGACGT
GACCAGACGCTTGTCTGAGGATTACGGCGTGCTGAAAACAGATGAGGGCATTGCCTACAGGGGCCTCTTTATCATCGATG
GCAAGGGTGTCCTTCGCCAGATCACTGTTAATGATTTGCCTGTGGGACGCTCCGTGGATGAGGCTCTGCGGCTGGTCCAG
GCCTTCCAGTACACAGACGAGCATGGGGAAGTTTGTCCCGCTGGCTGGAAGCCTGGCAGTGACACGATTAAGCCCAACGT
GGATGACAGCAAGGAATATTTCTCCAAACACAATTAG
| Library | Parental gene expression (RPM) |
|---|---|
| SRP007412_brain_prefrontal_cortex | 248 .54 RPM |
| SRP007412_cerebellum | 154 .61 RPM |
| SRP007412_heart | 162 .69 RPM |
| SRP007412_kidney | 171 .84 RPM |
| SRP007412_liver | 66 .52 RPM |
| SRP007412_testis | 6 .11 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Ailuropoda melanoleuca | ENSAMEG00000012307 | ortholog_one2many | 3 retrogenes | |
| Canis familiaris | ENSCAFG00000017163 | ortholog_one2one | 3 retrogenes | |
| Ciona intestinalis | ENSCING00000003002 | ortholog_one2many | 1 retrogene | |
| Callithrix jacchus | ENSCJAG00000004882 | ortholog_one2one | 4 retrogenes | |
| Dipodomys ordii | ENSDORG00000009005 | ortholog_one2one | 1 retrogene | |
| Felis catus | ENSFCAG00000000473 | ortholog_one2one | 1 retrogene | |
| Homo sapiens | ENSG00000167815 | ortholog_one2one | 3 retrogenes | |
| Gorilla gorilla | ENSGGOG00000025089 | ortholog_one2one | 3 retrogenes | |
| Macaca mulatta | ENSMMUG00000005689 | ortholog_one2one | 2 retrogenes | |
| Monodelphis domestica | ENSMODG00000006978 | ortholog_one2one | 1 retrogene | |
| Mustela putorius furo | ENSMPUG00000004591 | ortholog_one2one | 2 retrogenes | |
| Mus musculus | ENSMUSG00000005161 | ortholog_one2many | 2 retrogenes | |
| Nomascus leucogenys | ENSNLEG00000012800 | ortholog_one2one | 2 retrogenes | |
| Otolemur garnettii | ENSOGAG00000024998 | ortholog_one2many | 2 retrogenes | |
| Pongo abelii | ENSPPYG00000009607 | ortholog_one2one | 3 retrogenes | |
| Pan troglodytes | ENSPTRG00000000675 | within_species_paralog | 1 retrogene | |
| Pan troglodytes | ENSPTRG00000002992 | within_species_paralog | 1 retrogene | |
| Rattus norvegicus | ENSRNOG00000003520 | ortholog_one2one | 2 retrogenes | |
| Sorex araneus | ENSSARG00000000146 | ortholog_one2one | 1 retrogene | |
| Sarcophilus harrisii | ENSSHAG00000015596 | ortholog_one2one | 1 retrogene | |
| Sus scrofa | ENSSSCG00000013736 | ortholog_one2one | 2 retrogenes | |
| Ictidomys tridecemlineatus | ENSSTOG00000025862 | ortholog_one2one | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_ptro_812 | 84.85 | 100.00 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_ptro_2217 | 67.20 | 91.41 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_ptro_2372 | 80.60 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSPTRG00000010541 retrocopies