RetrogeneDB ID: | retro_sscr_340 | ||
Retrocopylocation | Organism: | Pig (Sus scrofa) | |
Coordinates: | 13:143588878..143589352(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL17 | ||
Ensembl ID: | ENSSSCG00000029642 | ||
Aliases: | None | ||
Description: | ribosomal protein L17 [Source:HGNC Symbol;Acc:10307] |
Percent Identity: | 74.53 % |
Parental protein coverage: | 86.34 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | GSNLRVHFKNTRETAQAIKGMHIRKATKYLKDFTLQKQCVPFRRYNG-VGRCAQAKQWGWTQGRWPKKSA |
GSNL.VHFKNT...AQAI..MH..K.TKYLK..TL.K.CVPF..YNG...RCAQ.KQWGWTQ.....K.. | |
Retrocopy | GSNLHVHFKNTCKPAQAIRRMHTQKSTKYLKGVTLEKKCVPFCHYNGRTSRCAQTKQWGWTQTWEAQKEG |
Parental | EFLLHMLKNAESNAELKGLDVDSLVIEHIQVNK-APKMRRRTYRAHGRINPYMSSPCHIEMI-LTEKEQI |
.FLLHMLKN.ESNAELKGL.VDSLVIEHIQVNK.APKM..RTYRAH..INPY.SSPCHIEMI.LTEKEQ. | |
Retrocopy | *FLLHMLKNGESNAELKGLEVDSLVIEHIQVNK<APKMQCRTYRAHSQINPYVSSPCHIEMI>LTEKEQT |
Parental | VPKPEEEVAQKKKISQKKLKK |
VPKPEE.V.Q.KKISQKKL.K | |
Retrocopy | VPKPEEKVRQ-KKISQKKLNK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP014902_placenta | 0 .00 RPM | 409 .48 RPM |
SRP014902_testis | 0 .00 RPM | 1086 .45 RPM |
SRP018288_heart | 0 .00 RPM | 699 .89 RPM |
SRP018288_kidney | 0 .00 RPM | 518 .83 RPM |
SRP018288_liver | 0 .00 RPM | 468 .70 RPM |
SRP018288_lung | 0 .00 RPM | 447 .73 RPM |
SRP018856_adipose | 0 .00 RPM | 2235 .01 RPM |
SRP035408_brain | 0 .03 RPM | 1765 .53 RPM |
SRP035408_liver | 0 .03 RPM | 949 .78 RPM |