RetrogeneDB ID: | retro_sscr_111 | ||
Retrocopylocation | Organism: | Pig (Sus scrofa) | |
Coordinates: | 1:75022103..75022573(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL17 | ||
Ensembl ID: | ENSSSCG00000029642 | ||
Aliases: | None | ||
Description: | ribosomal protein L17 [Source:HGNC Symbol;Acc:10307] |
Percent Identity: | 76.58 % |
Parental protein coverage: | 83.61 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 1 |
Parental | ETAQAIKGMHIRKATKYLKDFTLQKQCVPFRRYNG-VGRCAQAKQWGWTQGRWPKKSAEFLLHMLKNAES |
.TAQAIKG.HI.KATKYLKD.TLQKQCVPFR.YNG.VGRCAQAKQWGWT.G.WPKKS.EFLLH...NAES | |
Retrocopy | KTAQAIKGVHI*KATKYLKDVTLQKQCVPFRHYNGGVGRCAQAKQWGWT*GWWPKKSTEFLLHVPANAES |
Parental | NA--ELKGLDVDSLVIEHIQVNKAPKMRRRTYRAHGRINPYMSSPCHIEMILTEKE-QIVPKPE-EEVAQ |
N...ELKGLDVDSLV.EHIQVNKAPK...RT.RAHG.INPYMSSPCH.EMILT.KE..IVPKPE.E.VAQ | |
Retrocopy | NSNDELKGLDVDSLVFEHIQVNKAPKILCRT*RAHGSINPYMSSPCHTEMILTKKE<VIVPKPEQEQVAQ |
Parental | KKKISQKKLKKQKLMARE |
KK........KQKL.A.E | |
Retrocopy | KKXXXXXXXXKQKLTAWE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP014902_placenta | 2 .39 RPM | 409 .48 RPM |
SRP014902_testis | 6 .65 RPM | 1086 .45 RPM |
SRP018288_heart | 0 .05 RPM | 699 .89 RPM |
SRP018288_kidney | 0 .10 RPM | 518 .83 RPM |
SRP018288_liver | 0 .00 RPM | 468 .70 RPM |
SRP018288_lung | 0 .00 RPM | 447 .73 RPM |
SRP018856_adipose | 0 .45 RPM | 2235 .01 RPM |
SRP035408_brain | 0 .73 RPM | 1765 .53 RPM |
SRP035408_liver | 0 .44 RPM | 949 .78 RPM |